[Home] | [Total List]

[176913_at]

Description K06H7.5 /REP_DB=WormBase Gene ID /WP=CE00256 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99985.1
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 94      6grp_total > 86      4grp_total > 39      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 404.2
(3)
P 		353.8
(0.9)
P 		259.5
(-3)
P 		305.8
(-1.1)
P 		145
B 495.6
(3)
P 		301.5
(-3)
P 		342.5
(-1.7)
P 		356.4
(-1.3)
P 		194
C 518.3
(3)
P 		282.6
(-3)
P 		339.8
(-1.5)
P 		362.4
(-1)
P 		236
avr 472.7
(3) 		312.6
(-3) 		313.9
(-3) 		341.5
(-1.9) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 533
1 2 3 4 5 6 range
A 336.8
(-3)
P 		450.3
(-1.7)
P 		467.8
(-1.5)
P 		669.5
(0.8)
P 		554.6
(-0.5)
P 		857.5
(3)
P 		521
B 361.6
(-2.7)
P 		380.9
(-2.5)
P 		339.6
(-3)
P 		484.7
(-1.1)
P 		587
(0.2)
P 		802.1
(3)
P 		463
C 324.3
(-3)
P 		386.1
(-2.1)
P 		528.7
(-0)
P 		535.1
(0.1)
P 		495.9
(-0.5)
P 		738.7
(3)
P 		414
avr 340.9
(-3) 		405.8
(-2.2) 		445.4
(-1.6) 		563.1
(-0.1) 		545.8
(-0.3) 		799.4
(3) 		459
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 147.2
(3)
P 		76.8
(-1.1)
P 		67.8
(-1.7)
P 		44.8
(-3)
P 		102
B 158
(3)
P 		74.5
(-3)
P 		79.4
(-2.6)
P 		76
(-2.9)
P 		84
C 171.6
(3)
P 		81.2
(-1.9)
P 		118.4
(0.1)
P 		61.1
(-3)
P 		111
avr 158.9
(3) 		77.5
(-2) 		88.5
(-1.3) 		60.6
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 62.1
(-3)
P 		160.2
(1)
P 		101.9
(-1.4)
P 		169.8
(1.4)
P 		167.3
(1.3)
P 		208.8
(3)
P 		147
B 125.8
(-1.8)
P 		126.8
(-1.8)
P 		82.5
(-3)
P 		128.4
(-1.7)
P 		238.5
(1.3)
P 		299.1
(3)
P 		217
C 120.2
(-2.5)
P 		117.8
(-2.6)
P 		134.6
(-1.8)
P 		107.6
(-3)
P 		160.5
(-0.7)
P 		247.3
(3)
P 		140
avr 102.7
(-3) 		134.9
(-1.7) 		106.3
(-2.9) 		135.3
(-1.7) 		188.8
(0.5) 		251.7
(3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176913_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6535
Sequence Type Exemplar sequence
Representative Public ID K06H7.5 NCBI
Target Description K06H7.5 /REP_DB=WormBase Gene ID /WP=CE00256 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99985.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066361 NCBI Caenorhabditis elegans Anaphase Promoting Complex; see also mat family member (apc-2) (apc-2) mRNA, complete cds. 11/11 A 
SNAP00000036729 ENSEMBL cdna:SNAP chromosome:CEL140:III:8080591:8083529:1 11/11 None
GENEFINDER00000036745 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8080591:8083529:1 11/11 None
K06H7.6 ENSEMBL cdna:known chromosome:CEL140:III:8080548:8083548:1 gene:K06H7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8082075-8083527(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol apc-2
Ensembl K06H7.6
Entrez Gene 176139 Entrez gene
SwissProt P34514 EMBL-EBI
WormBase CE26943 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7049 cell cycle inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99984 Anaphase promoting complex; see also mat protein 2 [Caenorhabditis elegans] ref|NP_498762.1| Anaphase Promoting Complex; see also mat family member (apc-2) [Caenorhabditis elegans] sp|P34514|ANC2_CAEEL Anaphase-promoting complex subunit 2 (APC2) (Cyclosome subunit 2) 0.0
blast CAE75059 Hypothetical protein CBG22973 [Caenorhabditis briggsae] 0.0
blast XP_415533 PREDICTED: similar to Anaphase promoting complex subunit 2 (APC2) (Cyclosome subunit 2) [Gallus gallus] 7.0E-52
Sequence
Target Sequence 
>C. ELEGANS:176913_AT
aattccaaatatgtacgctcttctcctcttcttgttcctcgaaaaagaaacatggacaac
tgctgaagtagtcgagaaaatgggaatgtcagtggttgtgacaagaaaacgattggaatg
gctggttaaacaaggatttatttgcatgaatcccattatcagtagcgacacgtggacatt
gacccggaatccaagtggaatttccatcgttcgaccaggcacaccggaccttgaagacga
tgaagatgtggaaccggaagagaattctgatatggttgatgctttagaacaatattgggg
atatactagaaatttcattgccaatcatgcacctaacggagaagtgaaagcggaacggat
gcatcgtgtctaccgtatgttcggttctccaacttctgcaggacccactcttgatcatgt
ttccgcgtttttgcaaagaaaagttgcgctgggactgctaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCAAATATGTACGCTCTTCTC 134 179 636 Antisense
GAATCCCATTATCAGTAGCGACACG 177 329 783 Antisense
GTAGCGACACGTGGACATTGACCCG 446 457 797 Antisense
AAGTGGAATTTCCATCGTTCGACCA 703 157 828 Antisense
AGGCACACCGGACCTTGAAGACGAT 666 53 852 Antisense
TTTCATTGCCAATCATGCACCTAAC 191 673 948 Antisense
GCGGAACGGATGCATCGTGTCTACC 54 295 985 Antisense
GTGTCTACCGTATGTTCGGTTCTCC 62 447 1001 Antisense
AGGACCCACTCTTGATCATGTTTCC 541 55 1035 Antisense
TCATGTTTCCGCGTTTTTGCAAAGA 356 623 1050 Antisense
AAAAGTTGCGCTGGGACTGCTAACC 165 133 1074 Antisense
Sequence Source Affymetrix Proprietary Database