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[176911_at]

Description Y47D3A.20 /REP_DB=WormBase Gene ID /WP=CE22050 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB55080.1
Cluster 6grp_total > 99      4grp_total > 16      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 67.4
(-2.1)
A 		109.2
(1.1)
A 		55.7
(-3)
A 		134.8
(3)
A 		79
B 94.1
(-2.7)
A 		95.2
(-2.5)
A 		91.4
(-3)
A 		137.9
(3)
M 		47
C 64.6
(-3)
A 		74.2
(-2.2)
A 		140.7
(3)
A 		127.4
(2)
A 		76
avr 75.4
(-3) 		92.9
(-1.2) 		95.9
(-0.9) 		133.4
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 97.2
(-1.8)
A 		79.1
(-3)
A 		123.3
(0)
A 		103.2
(-1.4)
A 		167.5
(3)
A 		145.3
(1.5)
A 		88
B 122.7
(0.6)
A 		95.6
(-1)
A 		160.7
(2.8)
A 		62.2
(-3)
A 		135.6
(1.3)
A 		163.7
(3)
A 		102
C 90
(-1.7)
A 		77.9
(-3)
A 		89.3
(-1.8)
A 		108.3
(0.2)
A 		134.4
(2.9)
A 		134.9
(3)
A 		57
avr 103.3
(-1.2) 		84.2
(-3) 		124.4
(0.8) 		91.2
(-2.3) 		145.8
(2.8) 		148
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 24.5
(3)
A 		23.7
(2.5)
A 		14.6
(-3)
A 		19.7
(0.1)
A 		10
B 30
(3)
A 		23.5
(-1.4)
A 		21.2
(-3)
A 		29.4
(2.6)
M 		9
C 21.4
(-3)
A 		21.3
(-3)
A 		49
(3)
A 		21.5
(-3)
A 		28
avr 25.3
(-0.3) 		22.8
(-3) 		28.3
(3) 		23.5
(-2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 17.9
(-3)
A 		28.1
(-1.1)
A 		26.9
(-1.3)
A 		26.2
(-1.5)
A 		50.5
(3)
A 		35.4
(0.2)
A 		33
B 42.7
(0.5)
A 		31.8
(-0.9)
A 		39
(0)
A 		16.5
(-3)
A 		55.1
(2.2)
A 		61
(3)
A 		45
C 33.4
(-0)
A 		23.8
(-2.5)
A 		22.7
(-2.8)
A 		21.8
(-3)
A 		43.5
(2.6)
A 		45.1
(3)
A 		23
avr 31.3
(-0.9) 		27.9
(-1.6) 		29.5
(-1.3) 		21.5
(-3) 		49.7
(3) 		47.2
(2.5) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7289
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.20 NCBI
Target Description Y47D3A.20 /REP_DB=WormBase Gene ID /WP=CE22050 /CHR=3 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB55080.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027704
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027704 NCBI Caenorhabditis elegans Y47D3A.20 (Y47D3A.20) mRNA, complete cds. None
Y47D3A.20 ENSEMBL cdna:known chromosome:CEL140:III:11274777:11275797:1 gene:Y47D3A.20 None
GENEFINDER00000007269 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11274777:11275797:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11274772-11275793(+) 86.83 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3A.20
Entrez Gene 3565090 Entrez gene
SwissProt Q7YXC5 EMBL-EBI
WormBase CE34121 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD91710 Hypothetical protein Y47D3A.20 [Caenorhabditis elegans] ref|NP_001022875.1| Y47D3A.20 [Caenorhabditis elegans] 1.0E-53
blast T31531 hypothetical protein Y47D3A.20 - Caenorhabditis elegans 3.0E-47
Sequence
Target Sequence 
>C. ELEGANS:176911_AT
ctcatccaatttcctcgtttatttaaaggtttctcatcgattttccattttccaccactc
aacaagccaaaaatgcagagcccacgcgcttcagcatcaccagagcctcgacgaaatgag
acggatgatcagcgagagttcaaggcaatttcgacaaataccgaaagtatctccattttt
cgattacaatttatcttatacaatttccaaaaattcaaaaaaaaagttcgaaaaaaagtg
cgcggcggacttgcaataggctccgccccttttctgactgaaaatgaaatgcacgaatac
cgtatgtcaaagcttcgagaaagtctcaaagacgcccggaaaaccaattggattcacgtg
ggaaacgcgttccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATCCAATTTCCTCGTTTATTTA 379 229 91 Antisense
TTCCACCACTCAACAAGCCAAAAAT 165 699 140 Antisense
AGCCAAAAATGCAGAGCCCACGCGC 611 83 155 Antisense
GCATCACCAGAGCCTCGACGAAATG 516 309 184 Antisense
GAGACGGATGATCAGCGAGAGTTCA 256 393 208 Antisense
AAGTATCTCCATTTTTCGATTACAA 531 157 255 Antisense
AAAAGTGCGCGGCGGACTTGCAATA 497 131 324 Antisense
GGCGGACTTGCAATAGGCTCCGCCC 179 541 334 Antisense
GAATACCGTATGTCAAAGCTTCGAG 137 327 385 Antisense
GAGAAAGTCTCAAAGACGCCCGGAA 356 393 407 Antisense
GATTCACGTGGGAAACGCGTTCCGA 525 409 441 Antisense
Sequence Source Affymetrix Proprietary Database