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[176910_at]

Description Y23H5B.A /REP_DB=WormBase Gene ID /WP=CE23003 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60454.1
Cluster 6grp_total > 01      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4.6
(-2.4)
A 		4.1
(-3)
A 		9.5
(3)
A 		6.4
(-0.4)
A 		5
B 2.3
(-3)
A 		27
(3)
A 		23.2
(2.1)
A 		23.2
(2.1)
A 		25
C 11.7
(-3)
A 		22.4
(3)
A 		15.5
(-0.9)
A 		19.3
(1.3)
A 		11
avr 6.2
(-3) 		17.8
(3) 		16.1
(2.1) 		16.3
(2.2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 2.1
(-3)
A 		23.6
(3)
A 		3.5
(-2.6)
A 		3.1
(-2.7)
A 		3.9
(-2.5)
A 		6.8
(-1.7)
A 		22
B 6.2
(-1.8)
A 		23
(3)
A 		20.1
(2.2)
A 		2
(-3)
A 		3.8
(-2.5)
A 		3.1
(-2.7)
A 		21
C 3.7
(-3)
A 		35.5
(3)
A 		4
(-2.9)
A 		6.1
(-2.5)
A 		23.5
(0.7)
A 		3.9
(-3)
A 		32
avr 4
(-2.9) 		27.4
(3) 		9.2
(-1.6) 		3.7
(-3) 		10.4
(-1.3) 		4.6
(-2.8) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.7
(-0)
A 		0.9
(-3)
A 		2.5
(3)
A 		0.9
(-3)
A 		2
B 0.7
(-3)
A 		6.7
(3)
A 		5.4
(1.7)
A 		4.9
(1.2)
A 		6
C 3.9
(-1.9)
A 		6.5
(3)
A 		5.4
(0.9)
A 		3.3
(-3)
A 		3
avr 2.1
(-3) 		4.7
(3) 		4.4
(2.3) 		3
(-0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		8.4
(3)
A 		0.8
(-2.7)
A 		0.8
(-2.7)
A 		1.2
(-2.4)
A 		1.7
(-2)
A 		8
B 2.2
(-1.6)
A 		7.6
(3)
A 		4.9
(0.7)
A 		0.5
(-3)
A 		1.6
(-2.1)
A 		1.2
(-2.4)
A 		7
C 1.4
(-2.8)
A 		10.8
(3)
A 		1
(-3)
A 		1.2
(-2.9)
A 		7.6
(1)
A 		1.3
(-2.8)
A 		10
avr 1.3
(-2.6) 		8.9
(3) 		2.2
(-2) 		0.8
(-3) 		3.5
(-1) 		1.4
(-2.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18753
Sequence Type Exemplar sequence
Representative Public ID Y23H5B.A NCBI
Target Description Y23H5B.A /REP_DB=WormBase Gene ID /WP=CE23003 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60454.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058595 NCBI Caenorhabditis elegans Y23H5B.9 (Y23H5B.9) mRNA, complete cds. 11/11 None
SNAP00000000933 ENSEMBL cdna:SNAP chromosome:CEL140:I:2551376:2551591:-1 11/11 None
GENEFINDER00000000941 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2551376:2551591:-1 11/11 None
Y23H5B.9 ENSEMBL cdna:known chromosome:CEL140:I:2551376:2551591:-1 gene:Y23H5B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2551375-2551591(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23H5B.9
Entrez Gene 189529 Entrez gene
SwissProt Q9N472 EMBL-EBI
WormBase CE23003 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 1.6E-52
Sequence
Target Sequence 
>C. ELEGANS:176910_AT
atggcagacaagtccgcttacatgggagccggtggatacggatccggctacatgggatcc
aatgcgtcgtcttctggatacgcccgtgaggactacgcccagggtggaaatggtggatca
aacaacaaccagcaacaaggatccggagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAGACAAGTCCGCTTACATGG 205 53 13 Antisense
ACAAGTCCGCTTACATGGGAGCCGG 179 113 20 Antisense
CGGTGGATACGGATCCGGCTACATG 78 241 42 Antisense
GGATACGGATCCGGCTACATGGGAT 82 511 46 Antisense
CTTCTGGATACGCCCGTGAGGACTA 695 219 83 Antisense
TCTGGATACGCCCGTGAGGACTACG 417 605 85 Antisense
GTGAGGACTACGCCCAGGGTGGAAA 260 479 98 Antisense
CTACGCCCAGGGTGGAAATGGTGGA 610 221 105 Antisense
GGTGGATCAAACAACAACCAGCAAC 531 497 124 Antisense
CAACAACCAGCAACAAGGATCCGGA 640 189 135 Antisense
CAACCAGCAACAAGGATCCGGAGGA 352 185 138 Antisense
Sequence Source Affymetrix Proprietary Database