[Home] | [Total List]

[176909_s_at]

Description C46H11.5 /REP_DB=WormBase Gene ID /WP=CE08787 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99884.1
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 29      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 80      6grp_total > 27      4grp_total > 61      6grp_highest_sub > 01_02      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 307.3
(-1.6)
P 		495.6
(3)
P 		451.4
(1.9)
P 		247.4
(-3)
P 		248
B 377.8
(3)
P 		336.7
(1.3)
P 		228.6
(-3)
P 		290.6
(-0.5)
P 		149
C 410.4
(3)
P 		217.1
(-3)
P 		368.6
(1.7)
P 		284.5
(-0.9)
P 		193
avr 365.2
(3) 		349.8
(2) 		349.5
(2) 		274.2
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 274.6
(3)
P 		243.7
(1.9)
P 		111.2
(-3)
P 		163.5
(-1.1)
P 		189.1
(-0.1)
P 		206.9
(0.5)
P 		163
B 196.2
(-1.2)
P 		309.1
(3)
P 		190.6
(-1.4)
P 		146.3
(-3)
P 		258.9
(1.1)
P 		178.8
(-1.8)
P 		163
C 315.9
(3)
P 		251.3
(1.2)
P 		212.3
(0.1)
P 		102.6
(-3)
P 		182.6
(-0.7)
P 		209.1
(-0)
P 		213
avr 262.2
(2.7) 		268
(3) 		171.4
(-1.4) 		137.5
(-3) 		210.2
(0.3) 		198.3
(-0.2) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 111.9
(2.6)
P 		107.6
(2.2)
P 		118
(3)
P 		36.2
(-3)
P 		82
B 120.5
(3)
P 		83.2
(-0.3)
P 		53
(-3)
P 		61.9
(-2.2)
P 		68
C 135.9
(3)
P 		62.4
(-2)
P 		128.5
(2.5)
P 		48
(-3)
P 		88
avr 122.8
(3) 		84.4
(-0.1) 		99.8
(1.1) 		48.7
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 50.6
(-0.5)
P 		86.7
(3)
P 		24.2
(-3)
P 		41.5
(-1.3)
P 		57.1
(0.2)
P 		50.4
(-0.5)
P 		63
B 68.3
(-0.3)
P 		102.9
(2.8)
P 		46.3
(-2.3)
P 		38.8
(-3)
P 		105.2
(3)
P 		66.7
(-0.5)
P 		66
C 117.1
(3)
P 		76.7
(0.5)
P 		54
(-0.9)
P 		20.6
(-3)
P 		59.1
(-0.6)
P 		70
(0.1)
P 		97
avr 78.7
(1.9) 		88.8
(3) 		41.5
(-2.1) 		33.6
(-3) 		73.8
(1.4) 		62.4
(0.1) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176909_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1300
Sequence Type Exemplar sequence
Representative Public ID C46H11.5 NCBI
Target Description C46H11.5 /REP_DB=WormBase Gene ID /WP=CE08787 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99884.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025878(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025878 NCBI Caenorhabditis elegans Let-23 Fertility effector/regulator family member (lfe-2) (lfe-2) mRNA, complete cds. 11/11 None
GENEFINDER00000043160 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5028864:5040765:1 11/11 None
C46H11.4c ENSEMBL cdna:known chromosome:CEL140:I:5027155:5041157:1 gene:C46H11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172128 3 1 NM_001025878 176909_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5028885-5031209(+) 100.0 100.0
Public Domain and Genome References
Ensembl C46H11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99884 Let-23 fertility effector/regulator protein 2, isoform c [Caenorhabditis elegans] ref|NP_001021049.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38962 inositol trisphosphate 3-kinase form 3 [Caenorhabditis elegans] 0.0
blast AAK71361 Let-23 fertility effector/regulator protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021048.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAK71360 Let-23 fertility effector/regulator protein 2, isoform a [Caenorhabditis elegans] ref|NP_001021047.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38960 inositol trisphosphate 3-kinase form 1 [Caenorhabditis elegans] 0.0
blast T25639 hypothetical protein C46H11.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176909_S_AT
caaacgccaaggctgctggtcatggggaggtgtctttaattttaaaactaagacttttta
gatcatccaatagcgaagaaaaacggatgaaacggccgaaaaagctcccgtccaagttga
gattgaaaataagtggaaaccagcgtcgtcgtcgtgacgacacatttgtcgtttgggaag
agattccaactccatcagtatgtgatcatcgagatacaatgaactctgaggcttcatcga
gtccaccatctgctccaacacaagaacgtctcatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACGCCAAGGCTGCTGGTCATGG 419 191 17 Antisense
GATGAAACGGCCGAAAAAGCTCCCG 247 389 102 Antisense
AAAGCTCCCGTCCAAGTTGAGATTG 691 123 117 Antisense
TAAGTGGAAACCAGCGTCGTCGTCG 627 629 146 Antisense
ACCAGCGTCGTCGTCGTGACGACAC 33 87 155 Antisense
GTGACGACACATTTGTCGTTTGGGA 260 483 170 Antisense
GAGATTCCAACTCCATCAGTATGTG 225 397 196 Antisense
GAGATACAATGAACTCTGAGGCTTC 160 397 227 Antisense
AACTCTGAGGCTTCATCGAGTCCAC 427 141 238 Antisense
CCATCTGCTCCAACACAAGAACGTC 537 271 262 Antisense
GCTCCAACACAAGAACGTCTCATGC 8 299 268 Antisense
Sequence Source Affymetrix Proprietary Database