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[176908_at]

Description C46H11.5 /REP_DB=WormBase Gene ID /WP=CE08787 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99884.1
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.2
(-1.5)
A 		7.2
(-1)
A 		3.1
(-3)
A 		15.1
(3)
A 		12
B 5.3
(3)
A 		5.2
(2.8)
A 		3.8
(0.3)
A 		2
(-3)
A 		3
C 1.6
(-3)
A 		3.2
(0.2)
A 		4
(1.8)
A 		4.6
(3)
A 		3
avr 4.4
(-1.7) 		5.2
(-0.3) 		3.6
(-3) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 4.3
(3)
A 		1.8
(-3)
A 		2
(-2.5)
A 		3.4
(0.8)
A 		2.8
(-0.6)
A 		3.9
(2)
A 		3
B 3
(-2.3)
A 		3.4
(-2.1)
A 		9.5
(0.9)
A 		13.9
(3)
A 		1.5
(-3)
A 		4.9
(-1.4)
A 		12
C 1.5
(-3)
A 		51.1
(3)
A 		1.9
(-3)
A 		16.3
(-1.2)
A 		2.5
(-2.9)
A 		8.6
(-2.1)
A 		50
avr 2.9
(-2.8) 		18.8
(3) 		4.5
(-2.2) 		11.2
(0.2) 		2.3
(-3) 		5.8
(-1.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.2
(3)
A 		1.6
(0.4)
A 		0.8
(-3)
A 		2.2
(3)
A 		1
B 1.7
(3)
A 		1.3
(1.2)
A 		0.9
(-0.7)
A 		0.4
(-3)
A 		1
C 0.5
(-3)
A 		0.9
(-0.3)
A 		1.4
(3)
A 		0.8
(-1)
A 		1
avr 1.5
(3) 		1.3
(0.6) 		1
(-3) 		1.1
(-1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.8
(1.8)
A 		0.6
(-0.6)
A 		0.4
(-3)
A 		0.9
(3)
A 		0.9
(3)
A 		0.9
(3)
A 		1
B 1.1
(-2)
A 		1.1
(-2)
A 		2.3
(0.3)
A 		3.7
(3)
A 		0.6
(-3)
A 		1.8
(-0.7)
A 		3
C 0.6
(-3)
A 		15.6
(3)
A 		0.5
(-3)
A 		3.3
(-1.9)
A 		0.8
(-2.9)
A 		2.9
(-2)
A 		15
avr 0.8
(-3) 		5.8
(3) 		1.1
(-2.6) 		2.6
(-0.8) 		0.8
(-3) 		1.9
(-1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1300
Sequence Type Exemplar sequence
Representative Public ID C46H11.5 NCBI
Target Description C46H11.5 /REP_DB=WormBase Gene ID /WP=CE08787 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99884.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025878
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043160 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5028864:5040765:1 None
NM_001025878 NCBI Caenorhabditis elegans Let-23 Fertility effector/regulator family member (lfe-2) (lfe-2) mRNA, complete cds. None
C46H11.4c ENSEMBL cdna:known chromosome:CEL140:I:5027155:5041157:1 gene:C46H11.4 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5028885-5031209(+) 100.0 100.0
Public Domain and Genome References
Ensembl C46H11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99884 Let-23 fertility effector/regulator protein 2, isoform c [Caenorhabditis elegans] ref|NP_001021049.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38962 inositol trisphosphate 3-kinase form 3 [Caenorhabditis elegans] 0.0
blast AAK71361 Let-23 fertility effector/regulator protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021048.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAK71360 Let-23 fertility effector/regulator protein 2, isoform a [Caenorhabditis elegans] ref|NP_001021047.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38960 inositol trisphosphate 3-kinase form 1 [Caenorhabditis elegans] 0.0
blast T25639 hypothetical protein C46H11.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176908_AT
ctggtcatggggaggtgtctttaattttaaaactaagactttttagatcatccaatagcg
aagaaaaacggatgaaacggccgaaaaagctcccgtccaagttgagattgaaaataagtg
gaaaccagcgtcgtcgtcgtgacgacacatttgtcgtttgggaagagattccaactccat
cagtatgtgatcatcgagatacaatgaactctgaggcttcatcgagtccaccatctgctc
caacacaagaacgtctcatgcaggtgagagcaccgtttatcgggtcaaatttttctcaaa
ctcgtgcctccagaacccataaaagtttgcatgttcgttcgcgaaacacaacggtcaact
tcattttcgcacctttttccgccgttatcagtttattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTCATGGGGAGGTGTCTTTAAT 425 241 32 Antisense
AGACTTTTTAGATCATCCAATAGCG 482 71 67 Antisense
GAACGTCTCATGCAGGTGAGAGCAC 466 347 280 Antisense
GGTGAGAGCACCGTTTATCGGGTCA 433 499 294 Antisense
GAGCACCGTTTATCGGGTCAAATTT 556 365 299 Antisense
CAAATTTTTCTCAAACTCGTGCCTC 275 193 317 Antisense
CGTGCCTCCAGAACCCATAAAAGTT 693 245 334 Antisense
AAAAGTTTGCATGTTCGTTCGCGAA 418 129 352 Antisense
GTTCGCGAAACACAACGGTCAACTT 623 441 368 Antisense
AACGGTCAACTTCATTTTCGCACCT 464 143 381 Antisense
TTTTCCGCCGTTATCAGTTTATTCG 243 675 406 Antisense
Sequence Source Affymetrix Proprietary Database