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[176907_at]

Description Y59E1A.B /REP_DB=WormBase Gene ID /WP=CE22654 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59618.1
Cluster 6grp_total > 53      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.7
(2.4)
A 		10.7
(1.6)
A 		5.2
(-3)
A 		12.4
(3)
A 		7
B 18.9
(3)
A 		10.4
(-1.3)
A 		11.4
(-0.8)
A 		6.9
(-3)
A 		12
C 6.8
(-2.2)
A 		9.1
(-1.5)
A 		4.6
(-3)
A 		22.1
(3)
A 		18
avr 12.5
(1.8) 		10.1
(-0.3) 		7.1
(-3) 		13.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 16.7
(-1.3)
A 		5.8
(-2.8)
A 		47.5
(3)
A 		8.9
(-2.4)
A 		11.1
(-2.1)
A 		4.5
(-3)
A 		43
B 6.1
(-0.4)
A 		7.7
(3)
A 		5.7
(-1.3)
A 		6.5
(0.4)
A 		6.6
(0.6)
A 		4.9
(-3)
A 		3
C 7.2
(-3)
A 		12.3
(-2)
A 		38.9
(3)
A 		14.1
(-1.7)
A 		7.3
(-3)
A 		17.2
(-1.1)
A 		32
avr 10
(-2.5) 		8.6
(-2.9) 		30.7
(3) 		9.8
(-2.6) 		8.3
(-3) 		8.9
(-2.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.3
(3)
A 		2.3
(-1.1)
A 		1.4
(-3)
A 		1.8
(-2.2)
A 		3
B 6
(3)
A 		2.6
(-1.5)
A 		2.6
(-1.5)
A 		1.5
(-3)
A 		5
C 2.2
(-1.3)
A 		2.6
(-0.1)
A 		1.6
(-3)
A 		3.7
(3)
A 		2
avr 4.2
(3) 		2.5
(-1.4) 		1.9
(-3) 		2.3
(-2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.1
(-1.7)
A 		2.1
(-2.3)
A 		10.3
(3)
A 		2.3
(-2.2)
A 		3.4
(-1.5)
A 		1.1
(-3)
A 		9
B 2.1
(0.2)
A 		2.5
(2.1)
A 		1.4
(-3)
A 		1.7
(-1.6)
A 		2.7
(3)
A 		1.8
(-1.2)
A 		1
C 2.7
(-2.7)
A 		3.7
(-1.9)
A 		9.9
(3)
A 		2.8
(-2.6)
A 		2.3
(-3)
A 		5.8
(-0.2)
A 		8
avr 2.6
(-2.6) 		2.8
(-2.4) 		7.2
(3) 		2.3
(-3) 		2.8
(-2.4) 		2.9
(-2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19589
Sequence Type Exemplar sequence
Representative Public ID Y59E1A.B NCBI
Target Description Y59E1A.B /REP_DB=WormBase Gene ID /WP=CE22654 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59618.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075954 NCBI Caenorhabditis elegans Y59E1A.1 (Y59E1A.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000009498 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1938038:1942193:-1 11/11 None
Y59E1A.1 ENSEMBL cdna:known chromosome:CEL140:X:1937941:1942193:-1 gene:Y59E1A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1938037-1945025(-) 91.57 100.0
chrX:1949267-1953554(-) 72.03 72.03
Public Domain and Genome References
Gene Title
Ensembl Y59E1A.1
Entrez Gene 190408 Entrez gene
SwissProt Q968Z2 EMBL-EBI
WormBase CE32540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39347 Hypothetical protein Y59E1A.1 [Caenorhabditis elegans] ref|NP_508355.2| Y59E1A.1 [Caenorhabditis elegans] 0.0
blast AAC78152 Hypothetical protein F52D2.1 [Caenorhabditis elegans] ref|NP_508358.1| F52D2.1 [Caenorhabditis elegans] 1.0E-173
blast AAK68895 Hypothetical protein Y54F10BM.4 [Caenorhabditis elegans] ref|NP_497531.1| Y54F10BM.4 [Caenorhabditis elegans] 2.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-57
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.4E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508355.2 1 446-465
Y59E1A.1 1 446-465
Sequence
Target Sequence 
>C. ELEGANS:176907_AT
atatctcgcgaatccctgaatctgctcagatgtcgtctcctgacagctcacaatccaaga
aggcagttggatcccatccatctgcacgctcagttttcccatcaatggattctagcgtct
tcacggatgatgacgggtgtgagatattgcattcgacggcaaaaacttgcgcaccgccgg
atccttgctttcccacatctccttttttttgtgtggaaagtcctgatgtgacagatttat
cgcctgacaaaccagtggaagatatcctgaaactgggaacggggagtagagtttgtgggg
aaatatatgtttctgactctaattttgcccctgatgccgaatatccatgtgaaaaaattc
aaaaaaatttccctgattttatattaatttttaaaatccgaaaattcattggatgccagt
atgtgagttttcaaacgttgaattttcccgccagagacgtgccgcagcacacacacacac
tctctctctctctcttcgctctcactgctggttgtctcctctgcgtctctgccaggccgc
gctgggtacataacggagaacacttccaaggcctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCTCGCGAATCCCTGAATCTGC 101 21 1610 Antisense
TGAATCTGCTCAGATGTCGTCTCCT 118 575 1626 Antisense
TCTCCTGACAGCTCACAATCCAAGA 269 611 1645 Antisense
AGAAGGCAGTTGGATCCCATCCATC 527 75 1667 Antisense
ACGCTCAGTTTTCCCATCAATGGAT 377 89 1695 Antisense
TCAATGGATTCTAGCGTCTTCACGG 261 633 1711 Antisense
GACGGCAAAAACTTGCGCACCGCCG 253 377 1764 Antisense
TTCCCACATCTCCTTTTTTTTGTGT 586 695 1799 Antisense
GACAGATTTATCGCCTGACAAACCA 300 369 1839 Antisense
AGGCCGCGCTGGGTACATAACGGAG 525 51 2143 Antisense
ACGGAGAACACTTCCAAGGCCTCCA 523 95 2162 Antisense
Sequence Source Affymetrix Proprietary Database