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[176906_at]

Description Y24D9A.H /REP_DB=WormBase Gene ID /WP=CE21463 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60469.1
Cluster 6grp_total > 29      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.8
(-3)
A 		4.4
(-0.7)
A 		5.9
(1.5)
A 		6.9
(3)
A 		4
B 2.3
(-3)
A 		2.8
(-0.7)
A 		2.7
(-1.2)
A 		3.6
(3)
A 		1
C 2.5
(-3)
A 		3.7
(0.6)
A 		4.5
(3)
A 		4.1
(1.8)
A 		2
avr 2.5
(-3) 		3.6
(-0.3) 		4.4
(1.8) 		4.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.7
(-0.6)
A 		2.6
(-2.1)
A 		1.9
(-3)
A 		2.8
(-1.8)
A 		6.4
(3)
A 		4.7
(0.7)
A 		5
B 6
(3)
A 		1.7
(-3)
A 		2.8
(-1.5)
A 		3.1
(-1)
A 		2.4
(-2)
A 		2.8
(-1.5)
A 		4
C 2.5
(-3)
A 		3.6
(0)
A 		3.4
(-0.5)
A 		4.7
(3)
A 		3.1
(-1.4)
A 		3.2
(-1.1)
A 		2
avr 4.1
(3) 		2.6
(-3) 		2.7
(-2.6) 		3.5
(0.6) 		4
(2.6) 		3.6
(1) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1
(-3)
A 		1
(-3)
A 		1.6
(3)
A 		1
(-3)
A 		1
B 0.7
(-0)
A 		0.7
(-0)
A 		0.6
(-3)
A 		0.8
(3)
A 		0
C 0.8
(-2.3)
A 		1
(-1)
A 		1.6
(3)
A 		0.7
(-3)
A 		1
avr 0.8
(-3) 		0.9
(-1.8) 		1.3
(3) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.7
(-1.8)
A 		0.9
(-1)
A 		0.4
(-3)
A 		0.7
(-1.8)
A 		1.9
(3)
A 		1.1
(-0.2)
A 		2
B 2.1
(3)
A 		0.6
(-3)
A 		0.7
(-2.6)
A 		0.8
(-2.2)
A 		1
(-1.4)
A 		1
(-1.4)
A 		2
C 0.9
(-3)
A 		1.1
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
(-0)
A 		1.1
(3)
A 		0
avr 1.2
(2) 		0.9
(-1) 		0.7
(-3) 		0.8
(-2) 		1.3
(3) 		1.1
(1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176906_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19191
Sequence Type Exemplar sequence
Representative Public ID Y24D9A.H NCBI
Target Description Y24D9A.H /REP_DB=WormBase Gene ID /WP=CE21463 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60469.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y24D9A.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y24D9A.H Y24D9A.H /REP_DB=WormBase Gene ID /WP=CE21463 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60469.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027696 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4399303-4399690(+) 79.33 100.0
Sequence
Target Sequence 
>C. ELEGANS:176906_AT
atgagcgttttgtgccgtacacacatacacatattgcacagccgagaaagacaaatttcg
aaaagagtattgtatgatgatgatgatgatgatggctcaatcgggaaaagaggagaaaac
gaagaaagaaaaagatcgagagagagagagagagagagagagagagagagagagagagag
actggagagacacagaagccccgaccaaaacttggtactgtgttatgtgcggcgacggcg
cggtggtggtgtctgtgtgtgcgcaccgtcccattctcgtcgcgtcggcacaaggaatgt
tcacgcagagcccggcgggagagtgcaagagctcgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCGTTTTGTGCCGTACACACA 143 41 13 Antisense
GTTTTGTGCCGTACACACATACACA 603 447 19 Antisense
CACATACACATATTGCACAGCCGAG 19 197 34 Antisense
GATGATGGCTCAATCGGGAAAAGAG 503 407 100 Antisense
CTGGAGAGACACAGAAGCCCCGACC 386 239 194 Antisense
GCCCCGACCAAAACTTGGTACTGTG 316 277 210 Antisense
TGGTACTGTGTTATGTGCGGCGACG 93 553 225 Antisense
CTCGTCGCGTCGGCACAAGGAATGT 163 233 288 Antisense
CAAGGAATGTTCACGCAGAGCCCGG 701 181 303 Antisense
CACGCAGAGCCCGGCGGGAGAGTGC 589 199 314 Antisense
GGCGGGAGAGTGCAAGAGCTCGCGC 436 541 326 Antisense
Sequence Source Affymetrix Proprietary Database