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[176905_at]

Description Y24D9A.I /REP_DB=WormBase Gene ID /WP=CE21464 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60470.1
Cluster 6grp_total > 33      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 232.4
(3)
A 		185.7
(-3)
A 		191.1
(-2.3)
A 		218.6
(1.2)
A 		47
B 274
(3)
P 		239.6
(-0)
A 		206
(-3)
A 		241.2
(0.1)
A 		68
C 267.1
(3)
A 		231.3
(0.1)
A 		217.8
(-0.9)
A 		192.1
(-3)
A 		75
avr 257.8
(3) 		218.9
(-1.4) 		205
(-3) 		217.3
(-1.6) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 109.3
(-3)
A 		201.8
(3)
M 		195.3
(2.6)
A 		144.7
(-0.7)
A 		157.8
(0.1)
A 		195.4
(2.6)
A 		93
B 171.3
(3)
A 		140.5
(0.6)
A 		162
(2.3)
A 		93.7
(-3)
A 		170.5
(2.9)
A 		102
(-2.4)
A 		78
C 267.4
(3)
P 		181.8
(0.3)
A 		196.4
(0.8)
A 		106
(-2)
A 		237.6
(2.1)
A 		74.8
(-3)
A 		193
avr 182.7
(2.5) 		174.7
(1.9) 		184.6
(2.7) 		114.8
(-3) 		188.6
(3) 		124.1
(-2.2) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 84.6
(3)
A 		40.3
(-2.1)
A 		50
(-0.9)
A 		32
(-3)
A 		53
B 87.4
(3)
P 		59.2
(-1.3)
A 		47.7
(-3)
A 		51.4
(-2.4)
A 		40
C 88.4
(3)
A 		66.5
(0.7)
A 		75.9
(1.7)
A 		32.4
(-3)
A 		56
avr 86.8
(3) 		55.3
(-0.9) 		57.9
(-0.6) 		38.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 20.1
(-3)
A 		71.8
(3)
M 		42.5
(-0.4)
A 		36.7
(-1.1)
A 		47.6
(0.2)
A 		47.6
(0.2)
A 		52
B 59.6
(1.7)
A 		46.8
(-0)
A 		39.4
(-1)
A 		24.8
(-3)
A 		69.3
(3)
A 		38
(-1.2)
A 		45
C 99.1
(3)
P 		55.5
(-0.4)
A 		50
(-0.8)
A 		21.3
(-3)
A 		76.9
(1.3)
A 		25
(-2.7)
A 		78
avr 59.6
(2.2) 		58
(1.9) 		44
(-0.3) 		27.6
(-3) 		64.6
(3) 		36.9
(-1.5) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19177
Sequence Type Exemplar sequence
Representative Public ID Y24D9A.I NCBI
Target Description Y24D9A.I /REP_DB=WormBase Gene ID /WP=CE21464 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60470.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171318 NCBI Caenorhabditis elegans Y24D9A.1a (Y24D9A.1) mRNA, complete cds. 11/11 A 
SNAP00000027692 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4408828:4414580:1 11/11 None
Y24D9A.1a ENSEMBL cdna:known chromosome:CEL140:IV:4408599:4414672:1 gene:Y24D9A.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027697 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177206 2 1 NM_171318 176905_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4408857-4414586(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y24D9A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60470 Hypothetical protein Y24D9A.1a [Caenorhabditis elegans] ref|NP_741374.1| Y24D9A.1a [Caenorhabditis elegans] 0.0
blast AAL32234 Hypothetical protein Y24D9A.1b [Caenorhabditis elegans] ref|NP_741375.1| Y24D9A.1b [Caenorhabditis elegans] 0.0
blast CAE58525 Hypothetical protein CBG01680 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176905_AT
tcaaccccatcaaactggcagcaacgattgcgatgcaaccgatcccaaagtgtgatcctc
caccaccaccaccatcacgtgacacttatcatcacaacgtggcatctgtcgccgtgaatg
gaggtggctccactgcgtcgagccgagtctcatcgccagcttcatctctctcgtcaccga
gtcaaccatcgtgtaactgggagaaacagtttggagatattaagacactttctgaagcag
aagcttattttaagcaatttcataaggaatatccattgtatatggaatgtcatgaaatgt
tgacgaaagtttcatccgaatttcgagggcttgaagtgaagctgctcactgcagttgctc
ttagtaaaacgtcaccgtcaccgcagaatatgcagaatgtgaagcaaattgaaaagaaca
tacagaatcgatatgcacactttgagaaggatcccgaatttatgaaagctcgccaacgtc
acacggatcttcgctcgaagctaaacgtactgaagactcgtatcggtagctgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCCCATCAAACTGGCAGCAAC 380 631 1457 Antisense
AACGATTGCGATGCAACCGATCCCA 45 145 1479 Antisense
CCGATCCCAAAGTGTGATCCTCCAC 493 263 1495 Antisense
ACCACCATCACGTGACACTTATCAT 52 87 1524 Antisense
GCATCTGTCGCCGTGAATGGAGGTG 582 307 1558 Antisense
TCGTCACCGAGTCAACCATCGTGTA 467 599 1627 Antisense
AAGCTGCTCACTGCAGTTGCTCTTA 86 149 1795 Antisense
TGCTCTTAGTAAAACGTCACCGTCA 168 579 1812 Antisense
TTATGAAAGCTCGCCAACGTCACAC 547 657 1916 Antisense
TCACACGGATCTTCGCTCGAAGCTA 443 627 1935 Antisense
GAAGACTCGTATCGGTAGCTGGGAA 490 339 1968 Antisense
Sequence Source Affymetrix Proprietary Database