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[176903_at]

Description Y23H5B.B /REP_DB=WormBase Gene ID /WP=CE23004 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60455.1
Cluster 6grp_high1_10_10 > 0      6grp_total > 09      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 11.9
(-3)
A 		110.1
(3)
P 		38.3
(-1.4)
A 		20.3
(-2.5)
A 		98
B 51.5
(-1.5)
M 		108.9
(3)
P 		54.5
(-1.3)
M 		32.3
(-3)
P 		77
C 41.6
(-3)
A 		74.3
(0.8)
P 		68
(0)
P 		93.6
(3)
P 		52
avr 35
(-3) 		97.8
(3) 		53.6
(-1.2) 		48.7
(-1.7) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 127.4
(3)
P 		91.4
(0.3)
P 		123.9
(2.7)
P 		126.4
(2.9)
P 		57.6
(-2.3)
P 		48.1
(-3)
A 		79
B 162.2
(3)
P 		106.9
(-0.4)
P 		88.2
(-1.5)
P 		113.6
(0)
P 		63.7
(-3)
P 		82
(-1.9)
P 		99
C 156.7
(2.4)
P 		99.7
(-0.3)
P 		44.5
(-3)
P 		168.8
(3)
P 		77.7
(-1.4)
P 		83.5
(-1.1)
P 		124
avr 148.8
(3) 		99.3
(-0.6) 		85.5
(-1.6) 		136.3
(2.1) 		66.3
(-3) 		71.2
(-2.6) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 4.3
(-2.6)
A 		23.9
(3)
P 		10
(-1)
A 		3
(-3)
A 		21
B 16.4
(-0.2)
M 		26.9
(3)
P 		12.6
(-1.3)
M 		6.9
(-3)
P 		20
C 13.8
(-3)
A 		21.4
(1.6)
P 		23.7
(3)
P 		15.8
(-1.8)
P 		10
avr 11.5
(-1.9) 		24.1
(3) 		15.4
(-0.4) 		8.6
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 23.5
(0.4)
P 		32.5
(3)
P 		27
(1.4)
P 		32.1
(2.9)
P 		17.4
(-1.4)
P 		11.7
(-3)
A 		21
B 56.4
(3)
P 		35.6
(-0.6)
P 		21.4
(-3)
P 		30.1
(-1.5)
P 		25.9
(-2.2)
P 		30.6
(-1.4)
P 		35
C 58.1
(3)
P 		30.4
(-0.6)
P 		11.3
(-3)
P 		33.9
(-0.1)
P 		25.1
(-1.2)
P 		27.9
(-0.9)
P 		47
avr 46
(3) 		32.8
(-0) 		19.9
(-3) 		32
(-0.2) 		22.8
(-2.3) 		23.4
(-2.2) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18749
Sequence Type Exemplar sequence
Representative Public ID Y23H5B.B NCBI
Target Description Y23H5B.B /REP_DB=WormBase Gene ID /WP=CE23004 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60455.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058593 NCBI Caenorhabditis elegans Y23H5B.8 (Y23H5B.8) mRNA, complete cds. 11/11 None
GENEFINDER00000000938 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2546967:2548328:-1 11/11 None
Y23H5B.8 ENSEMBL cdna:known chromosome:CEL140:I:2546967:2548328:-1 gene:Y23H5B.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000931 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2546966-2548328(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23H5B.8
Entrez Gene 189528 Entrez gene
SwissProt Q9N474 EMBL-EBI
WormBase CE23004 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60455 Hypothetical protein Y23H5B.8 [Caenorhabditis elegans] ref|NP_490994.1| Y23H5B.8 [Caenorhabditis elegans] 3.0E-79
blast CAE60528 Hypothetical protein CBG04153 [Caenorhabditis briggsae] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:176903_AT
atggccaaaattctcttgttccttctctcgactttcttcgttttttccattgtctccggg
caacaaacaaactatgaaaattgtctcacgaagctcaacaaaatgaagaatattttgaat
aatttgaagctggaaactacgaaacacggcaaaaatgtgaaaattggtaatttggaaaca
ttttatcatatgtgcattgacacaacgaactgcgtagaatcaatggaaatcccagagcta
ctaaaaagtattttgagattcggaacaatgttcatgagatccgcctgtgaagacttgggc
ttaaaagtcggaccattcagtaaatgcatggaaaagacaaaattcgacgtaactactctg
aaaaacacgacgattggagaggataaaccaaagtgctggttgacacctgacgagttttca
gagcttcaacgggttgttcaagagcaatgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCAAAATTCTCTTGTTCCTTC 458 53 13 Antisense
TTTCCATTGTCTCCGGGCAACAAAC 166 667 56 Antisense
GAAAATTGTCTCACGAAGCTCAACA 364 353 88 Antisense
GAAGCTGGAAACTACGAAACACGGC 252 343 138 Antisense
GTGCATTGACACAACGAACTGCGTA 186 481 204 Antisense
GAACAATGTTCATGAGATCCGCCTG 287 353 275 Antisense
GATCCGCCTGTGAAGACTTGGGCTT 234 417 290 Antisense
GACAAAATTCGACGTAACTACTCTG 299 365 348 Antisense
AGTGCTGGTTGACACCTGACGAGTT 158 61 404 Antisense
AGTTTTCAGAGCTTCAACGGGTTGT 676 59 425 Antisense
AACGGGTTGTTCAAGAGCAATGCGG 272 143 440 Antisense
Sequence Source Affymetrix Proprietary Database