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[176902_at]

Description Y23H5B.E /REP_DB=WormBase Gene ID /WP=CE23006 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60458.1
Cluster 6grp_high1_10_10 > 09      6grp_total > 19      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 175.4
(-1.5)
P 		113.2
(-3)
P 		156.9
(-1.9)
A 		358.7
(3)
P 		246
B 151.9
(-1.7)
P 		88.9
(-2.7)
A 		67.4
(-3)
A 		444.4
(3)
P 		377
C 124.7
(-2.2)
P 		130.6
(-2)
M 		86.4
(-3)
A 		360.4
(3)
P 		274
avr 150.7
(-2) 		110.9
(-2.8) 		103.6
(-3) 		387.8
(3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 167.2
(-1.6)
P 		152.8
(-2.8)
P 		155.1
(-2.6)
P 		150
(-3)
M 		223.8
(3)
P 		160.3
(-2.2)
M 		74
B 255.2
(3)
P 		103.2
(-3)
P 		127.2
(-2.1)
P 		139.5
(-1.6)
P 		217
(1.5)
P 		110.9
(-2.7)
P 		152
C 246
(3)
P 		178.2
(-0.1)
P 		189.1
(0.4)
M 		154.7
(-1.1)
A 		201.4
(1)
P 		112.7
(-3)
P 		133
avr 222.8
(3) 		144.7
(-1.9) 		157.1
(-1.2) 		148.1
(-1.7) 		214.1
(2.4) 		128
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 63.9
(3)
P 		24.6
(-3)
P 		41
(-0.5)
A 		52.5
(1.3)
P 		39
B 48.4
(-0.5)
P 		22
(-2.5)
A 		15.6
(-3)
A 		94.7
(3)
P 		79
C 41.3
(-0.8)
P 		37.5
(-1.6)
M 		30.1
(-3)
A 		60.8
(3)
P 		31
avr 51.2
(0.4) 		28
(-3) 		28.9
(-2.9) 		69.3
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 30.8
(-3)
P 		54.3
(0.8)
P 		33.8
(-2.5)
P 		38
(-1.8)
M 		67.5
(3)
P 		39
(-1.7)
M 		37
B 88.8
(3)
P 		34.3
(-2.6)
P 		30.9
(-3)
P 		37
(-2.4)
P 		88.2
(2.9)
P 		41.3
(-1.9)
P 		58
C 91.2
(3)
P 		54.4
(-0.7)
P 		48.1
(-1.3)
M 		31.1
(-3)
A 		65.2
(0.4)
P 		37.7
(-2.3)
P 		60
avr 70.3
(2.5) 		47.7
(-1.1) 		37.6
(-2.7) 		35.4
(-3) 		73.6
(3) 		39.3
(-2.4) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18741
Sequence Type Exemplar sequence
Representative Public ID Y23H5B.E NCBI
Target Description Y23H5B.E /REP_DB=WormBase Gene ID /WP=CE23006 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60458.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058591 NCBI Caenorhabditis elegans Y23H5B.4 (Y23H5B.4) mRNA, complete cds. 11/11 None
SNAP00000000929 ENSEMBL cdna:SNAP chromosome:CEL140:I:2537842:2541849:1 11/11 None
GENEFINDER00000000937 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2537842:2541849:1 11/11 None
Y23H5B.4 ENSEMBL cdna:known chromosome:CEL140:I:2533269:2542093:1 gene:Y23H5B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2537841-2541849(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23H5B.4
Entrez Gene 189527 Entrez gene
SwissProt Q9N476 EMBL-EBI
WormBase CE31098 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60458 Hypothetical protein Y23H5B.4 [Caenorhabditis elegans] ref|NP_490992.2| Y23H5B.4 [Caenorhabditis elegans] 0.0
blast CAE60393 Hypothetical protein CBG03995 [Caenorhabditis briggsae] 0.0
blast CAE75244 Hypothetical protein CBG23201 [Caenorhabditis briggsae] 2.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490992.2 7 34-56,63-85,107-129,150-172,225-247,278-300,315-337
Y23H5B.4 7 34-56,63-85,107-129,150-172,225-247,278-300,315-337
SNAP00000000929 7 4-26,33-55,77-99,120-142,195-217,248-270,285-307
GENEFINDER00000000937 7 4-26,33-55,77-99,120-142,195-217,248-270,285-307
Sequence
Target Sequence 
>C. ELEGANS:176902_AT
ccttctgctcacaatcttcatgacactactcgtccgaatgctcatcgaagcaagagaacg
aaggtcccgactctgcggtggaatgggtaatggaaactcgcaagccgagaggacaactgc
aatgttaactggaattgttgcaatcttccttatcacagagctcccacaaggtgtgctcac
atttgccgccggagccaaccctcggctcacattcctcacacttcaaatgaacaatgtttt
cgacttgctctccctaattaatagtgccgtcaattttgtgctctgcgctctgatgtcaca
tgtttttagaagagaattcctccaaacattcggtgtctgctgtccccaatcgtcggaaaa
tcacagcggagcaccaatcaacaaaacctcaaatcgatcgattctctccacattcagcaa
cattgcaaaaccaaagacttccaagaaaaatgggttcctgccagtgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCTGCTCACAATCTTCATGACA 360 269 630 Antisense
ATGACACTACTCGTCCGAATGCTCA 297 45 649 Antisense
GTCCCGACTCTGCGGTGGAATGGGT 106 467 693 Antisense
GTTGCAATCTTCCTTATCACAGAGC 186 439 766 Antisense
CAGAGCTCCCACAAGGTGTGCTCAC 39 207 785 Antisense
GAACAATGTTTTCGACTTGCTCTCC 439 353 858 Antisense
TAGTGCCGTCAATTTTGTGCTCTGC 250 655 891 Antisense
TCCAAACATTCGGTGTCTGCTGTCC 666 587 950 Antisense
TGCTGTCCCCAATCGTCGGAAAATC 374 561 967 Antisense
TCTCTCCACATTCAGCAACATTGCA 29 613 1032 Antisense
AAAAATGGGTTCCTGCCAGTGCCAA 254 129 1075 Antisense
Sequence Source Affymetrix Proprietary Database