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[176899_s_at]

Description Y73E7A.C /REP_DB=WormBase Gene ID /WP=CE26413 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23385.1
Cluster 6grp_total > 53      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 27.3
(2)
A 		10.4
(-2)
A 		6
(-3)
A 		31.6
(3)
A 		26
B 4.4
(-3)
A 		24.3
(-1.1)
A 		7.3
(-2.7)
A 		66.7
(3)
A 		62
C 49.2
(3)
A 		34
(-1.2)
A 		27.6
(-3)
A 		39.8
(0.4)
A 		22
avr 27
(-0.5) 		22.9
(-1.3) 		13.6
(-3) 		46
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 8.1
(-2.4)
A 		8.9
(-2.3)
A 		42.9
(3)
A 		6.2
(-2.7)
A 		4.5
(-3)
A 		5
(-2.9)
A 		38
B 18.2
(-1)
A 		3.3
(-3)
A 		47.1
(3)
A 		5.8
(-2.7)
A 		7.2
(-2.5)
A 		5.2
(-2.7)
A 		44
C 5.8
(-3)
A 		45.3
(3)
A 		18.6
(-1.1)
A 		6.3
(-2.9)
A 		32.1
(1)
A 		8.7
(-2.6)
A 		40
avr 10.7
(-2.1) 		19.2
(-0.4) 		36.2
(3) 		6.1
(-3) 		14.6
(-1.3) 		6.3
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.9
(3)
A 		2.3
(-2.5)
A 		1.6
(-3)
A 		4.6
(-0.8)
A 		8
B 1.4
(-3)
A 		6
(-0.8)
A 		1.7
(-2.9)
A 		14.2
(3)
A 		13
C 16.3
(3)
A 		9.8
(-1.1)
A 		9.6
(-1.2)
A 		6.7
(-3)
A 		10
avr 9.2
(3) 		6
(-0.9) 		4.3
(-3) 		8.5
(2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.5
(-2.8)
A 		3.2
(-1.5)
A 		9.3
(3)
A 		1.6
(-2.7)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		8
B 6.3
(0)
A 		1.1
(-3)
A 		11.4
(3)
A 		1.5
(-2.8)
A 		2.9
(-2)
A 		1.9
(-2.5)
A 		10
C 2.2
(-2.6)
A 		13.8
(3)
A 		4.7
(-1.4)
A 		1.3
(-3)
A 		10.4
(1.4)
A 		2.9
(-2.2)
A 		13
avr 3.3
(-1.5) 		6
(0.9) 		8.5
(3) 		1.5
(-3) 		4.9
(-0.1) 		2
(-2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176899_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18733
Sequence Type Exemplar sequence
Representative Public ID Y73E7A.C NCBI
Target Description Y73E7A.C /REP_DB=WormBase Gene ID /WP=CE26413 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23385.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058470
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058470 NCBI Caenorhabditis elegans Y73E7A.6 (Y73E7A.6) mRNA, complete cds. A 
SNAP00000005638 ENSEMBL cdna:SNAP chromosome:CEL140:I:1600625:1626584:-1 None
GENEFINDER00000005646 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1607919:1610023:-1 None
Y73E7A.6 ENSEMBL cdna:known chromosome:CEL140:I:1607700:1610037:-1 gene:Y73E7A.6 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1607918-1611009(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73E7A.6
Entrez Gene 171724 Entrez gene
SwissProt Q9GUM4 EMBL-EBI
WormBase CE27537 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23384 Bt (bacillus thuringiensis) toxin resistant protein 4 [Caenorhabditis elegans] ref|NP_490872.1| BT (Bacillus thuringiensis) toxin REsistant family member (bre-4) [Caenorhabditis elegans] gb|AAS21308.1| BRE-4 [Caenorhabditis elegans] gb|AAM95168.1| UDPGalNAc:GlcNAc{beta}-R {beta}1,4-N-acetylgalactosaminyltransferase [Caenorhabditis elegans] 0.0
blast CAE74432 Hypothetical protein CBG22165 [Caenorhabditis briggsae] 0.0
blast AAG23386 Hypothetical protein Y73E7A.5 [Caenorhabditis elegans] ref|NP_490869.1| Y73E7A.5 [Caenorhabditis elegans] 1.0E-110
blast AAG23385 Hypothetical protein Y73E7A.6 [Caenorhabditis elegans] ref|NP_490871.1| Y73E7A.6 [Caenorhabditis elegans] dbj|BAA95694.1| bladder cancer related protein [Caenorhabditis elegans] 4.0E-51
blast CAE74426 Hypothetical protein CBG22159 [Caenorhabditis briggsae] 3.0E-48
blast AAG23385 Hypothetical protein Y73E7A.6 [Caenorhabditis elegans] ref|NP_490871.1| Y73E7A.6 [Caenorhabditis elegans] dbj|BAA95694.1| bladder cancer related protein [Caenorhabditis elegans] 4.0E-23
blast CAE74426 Hypothetical protein CBG22159 [Caenorhabditis briggsae] 3.0E-21
blast EAL29480 GA18490-PA [Drosophila pseudoobscura] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR009598 EMBL-EBI Bladder cancer-related BC10 1.1E-78
Pfam IPR009598 EMBL-EBI Bladder cancer-related BC10 2.5E-29
Pfam IPR003859 EMBL-EBI Metazoa galactosyltransferase 1.0E-126
Pfam IPR009598 EMBL-EBI Bladder cancer-related BC10 2.5E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490871.1 1 17-39
Y73E7A.6 1 17-39
SNAP00000005638 1 7-29
GENEFINDER00000005646 1 113-135
Sequence
Target Sequence 
>C. ELEGANS:176899_S_AT
gggcggagcctcaaaaaatggacttttaggacaattttttaagattttaacacgaaaaaa
ctcactgaactccattatcacactcaacagcggcccaaaaaagtgtgggatcgtgctcaa
cagtgcaaattcgcttaacccttccatcgagctcccattttttacacgtgctcgcttcaa
tatcatgcaaagccacaacccgatcggcggcgcccgtcaccagcttctgatcgccggaat
tttggagaaattcgactgcgaatacgtttccctcgtgtccggcaaaatgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCGGAGCCTCAAAAAATGGACTT 113 493 15 Antisense
AAAACTCACTGAACTCCATTATCAC 262 131 71 Antisense
CTCCATTATCACACTCAACAGCGGC 248 233 84 Antisense
GGGATCGTGCTCAACAGTGCAAATT 686 495 121 Antisense
AACAGTGCAAATTCGCTTAACCCTT 657 133 133 Antisense
GAGCTCCCATTTTTTACACGTGCTC 664 387 163 Antisense
ACACGTGCTCGCTTCAATATCATGC 95 109 178 Antisense
ATATCATGCAAAGCCACAACCCGAT 184 21 194 Antisense
CAGCTTCTGATCGCCGGAATTTTGG 591 203 235 Antisense
TTCGACTGCGAATACGTTTCCCTCG 377 691 265 Antisense
TTCCCTCGTGTCCGGCAAAATGTAT 414 693 282 Antisense
Sequence Source Affymetrix Proprietary Database