[Home] | [Total List]

[176897_at]

Description Y73E7A.F /REP_DB=WormBase Gene ID /WP=CE26416 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23391.1
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 90      6grp_total > 69      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 596
1 2 3 4 range
A 134.1
(-3)
P 		141.2
(-2.9)
P 		151.9
(-2.8)
P 		597.8
(3)
P 		464
B 117.4
(-2.7)
P 		159.5
(-2.3)
P 		88.2
(-3)
P 		684.2
(3)
P 		596
C 159.5
(-2.5)
P 		164.4
(-2.5)
P 		130.2
(-3)
P 		510.2
(3)
P 		380
avr 137
(-2.8) 		155
(-2.6) 		123.4
(-3) 		597.4
(3) 		474

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 201.2
(3)
P 		186.5
(1.6)
P 		146.9
(-2.3)
P 		140
(-3)
P 		152.6
(-1.8)
P 		193.8
(2.3)
P 		61
B 160.5
(-1.5)
P 		174.4
(-0.9)
P 		128.7
(-3)
P 		134.8
(-2.7)
P 		201.9
(0.4)
P 		258.9
(3)
P 		130
C 173.5
(-1.1)
P 		227.2
(1.3)
P 		139.6
(-2.6)
P 		130
(-3)
P 		131.1
(-3)
P 		265.7
(3)
P 		136
avr 178.4
(-0.5) 		196
(0.5) 		138.4
(-2.8) 		134.9
(-3) 		161.9
(-1.5) 		239.5
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 48.8
(-1.1)
P 		30.6
(-3)
P 		39.7
(-2)
P 		87.5
(3)
P 		57
B 37.4
(-2.2)
P 		39.4
(-2.1)
P 		20.4
(-3)
P 		145.8
(3)
P 		125
C 52.8
(-1.9)
P 		47.3
(-2.7)
P 		45.4
(-3)
P 		86
(3)
P 		41
avr 46.3
(-2.1) 		39.1
(-2.7) 		35.2
(-3) 		106.4
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 37.1
(-2.1)
P 		66.3
(3)
P 		32
(-3)
P 		35.5
(-2.4)
P 		46.1
(-0.5)
P 		47.2
(-0.3)
P 		34
B 55.9
(-0.7)
P 		58.1
(-0.5)
P 		31.3
(-3)
P 		35.7
(-2.6)
P 		82
(1.7)
P 		96.5
(3)
P 		65
C 64.3
(0.6)
P 		69.3
(1.1)
P 		35.5
(-2.1)
P 		26.1
(-3)
P 		42.4
(-1.4)
P 		89
(3)
P 		63
avr 52.4
(-0.3) 		64.6
(1.3) 		32.9
(-2.9) 		32.4
(-3) 		56.8
(0.2) 		77.6
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18709
Sequence Type Exemplar sequence
Representative Public ID Y73E7A.F NCBI
Target Description Y73E7A.F /REP_DB=WormBase Gene ID /WP=CE26416 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23391.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058466 NCBI Caenorhabditis elegans Y73E7A.3 (Y73E7A.3) mRNA, complete cds. 11/11 None
SNAP00000005636 ENSEMBL cdna:SNAP chromosome:CEL140:I:1583506:1593454:1 11/11 None
GENEFINDER00000005650 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1586168:1593454:1 11/11 None
Y73E7A.3 ENSEMBL cdna:known chromosome:CEL140:I:1586168:1593661:1 gene:Y73E7A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1586167-1592440(+) 97.51 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73E7A.3
Entrez Gene 190665 Entrez gene
SwissProt Q9GUM8 EMBL-EBI
WormBase CE38252 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251466_AT expressed protein at
CANINE:1601139_AT similar to solute carrier family 35, member F1 cfa
CANINE_2:CFA.16930.1.S1_AT similar to solute carrier family 35, member F1 cfa
CANINE_2:CFAAFFX.2304.1.S1_AT similar to solute carrier family 35, member F1 cfa
HG-U133_PLUS_2:228060_AT solute carrier family 35, member F1 hs
HG-U133B:228060_AT solute carrier family 35, member F1 hs
HU35KSUBA:RC_AA205168_AT solute carrier family 35, member F1 hs
U133_X3P:HS.20976.0.A1_3P_AT solute carrier family 35, member F1 hs
HG-U95B:59676_AT solute carrier family 35, member F1 hs
HG-U133_PLUS_2:240779_AT Solute carrier family 35, member F1 hs
HG-U133B:240779_AT Solute carrier family 35, member F1 hs
U133_X3P:HS.207064.0.A1_3P_AT Solute carrier family 35, member F1 hs
MG-U74CV2:166422_AT solute carrier family 35, member F1 mm
MOE430B:1436719_AT solute carrier family 35, member F1 mm
MOUSE430_2:1436719_AT solute carrier family 35, member F1 mm
MOE430B:1456343_AT solute carrier family 35, member F1 mm
MOUSE430_2:1456343_AT solute carrier family 35, member F1 mm
MOE430B:1444928_AT Solute carrier family 35, member F1, mRNA (cDNA clone MGC:69930 IMAGE:6826829) mm
MOUSE430_2:1444928_AT Solute carrier family 35, member F1, mRNA (cDNA clone MGC:69930 IMAGE:6826829) mm
Protein Similarities
Method ID Description E-Value
blast AAG23391 Hypothetical protein Y73E7A.3 [Caenorhabditis elegans] ref|NP_490867.3| Y73E7A.3 [Caenorhabditis elegans] 0.0
blast CAE74512 Hypothetical protein CBG22266 [Caenorhabditis briggsae] 1.0E-170
blast CAE74512 Hypothetical protein CBG22266 [Caenorhabditis briggsae] 1.0E-166
blast AAG23391 Hypothetical protein Y73E7A.3 [Caenorhabditis elegans] ref|NP_490867.3| Y73E7A.3 [Caenorhabditis elegans] 1.0E-109
blast CAE74512 Hypothetical protein CBG22266 [Caenorhabditis briggsae] 1.0E-101
blast XP_541220 PREDICTED: similar to solute carrier family 35, member F1 [Canis familiaris] 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR009262 EMBL-EBI Eukaryotic protein of unknown function DUF914 1.0E-126
Pfam IPR009262 EMBL-EBI Eukaryotic protein of unknown function DUF914 1.0E-126
Pfam IPR009262 EMBL-EBI Eukaryotic protein of unknown function DUF914 1.4E-80
Pfam IPR009262 EMBL-EBI Eukaryotic protein of unknown function DUF914 1.0E-126
Pfam IPR009262 EMBL-EBI Eukaryotic protein of unknown function DUF914 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490867.3 10 63-85,89-111,128-146,156-178,180-202,217-236,249-267,282-304,309-331,335-354
Y73E7A.3 10 63-85,89-111,131-153,168-190,247-264,277-296,309-327,342-364,369-391,395-414
SNAP00000005636 7 205-227,232-254,269-287,300-318,333-355,360-382,386-405
GENEFINDER00000005650 10 63-85,89-111,131-153,173-195,200-222,237-255,268-286,301-323,328-350,354-373
Sequence
Target Sequence 
>C. ELEGANS:176897_AT
aagttctcggggatattctgtgtctagcggcggctgtaatgtatgcgatatgtaatgtag
cagaggaattccttgtgaaacagcactctagaacagagtatctcggaatgcttggactct
ttggatgtattgtttccggtgtgcagacagccgtattcgaacaagaagccttgtcgaaaa
tcgtgtgggatgggactattgtctcctattttgcgttgttcgccttttcaatgttcatat
tctactcattggttactgtagttctgcagaagacgtccgcattgatgttcaatctatcga
cactgaccgccgatttttattcgctcttgtttggaatctttatgtttaaggatacggtaa
aattttttttagaagtttatcaatttgaaaatcaagaaaactttgcagttccactacctg
tactttgtttcattcatcgtttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCTCGGGGATATTCTGTGTCT 512 155 839 Antisense
TTCTGTGTCTAGCGGCGGCTGTAAT 576 687 854 Antisense
GTATCTCGGAATGCTTGGACTCTTT 346 453 936 Antisense
GATGTATTGTTTCCGGTGTGCAGAC 34 411 962 Antisense
GGTGTGCAGACAGCCGTATTCGAAC 295 499 976 Antisense
ACTATTGTCTCCTATTTTGCGTTGT 197 103 1033 Antisense
GTTGTTCGCCTTTTCAATGTTCATA 625 437 1053 Antisense
GAAGACGTCCGCATTGATGTTCAAT 426 339 1107 Antisense
TGTTCAATCTATCGACACTGACCGC 328 561 1124 Antisense
TGACCGCCGATTTTTATTCGCTCTT 606 567 1142 Antisense
GTACTTTGTTTCATTCATCGTTTGC 224 459 1258 Antisense
Sequence Source Affymetrix Proprietary Database