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[176896_at]

Description Y73E7A.D /REP_DB=WormBase Gene ID /WP=CE26414 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23386.1
Cluster 6grp_total > 53      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 3.3
(-3)
A 		7.1
(-2.5)
A 		48.1
(3)
A 		7.2
(-2.5)
A 		45
B 14.1
(-1.3)
A 		4.8
(-3)
A 		28
(1.2)
A 		37.7
(3)
A 		33
C 2.8
(-3)
A 		8.2
(-2.4)
A 		32.9
(0.2)
A 		58.7
(3)
A 		56
avr 6.7
(-3) 		6.7
(-3) 		36.3
(3) 		34.5
(2.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 35.2
(3)
A 		9
(-2.9)
A 		30
(1.8)
A 		8.6
(-3)
A 		24.9
(0.7)
A 		26.3
(1)
A 		27
B 12.6
(-2.8)
A 		27.7
(-1.5)
A 		78.2
(3)
A 		33.9
(-0.9)
A 		32.2
(-1.1)
A 		10.7
(-3)
A 		68
C 2.5
(-3)
A 		31.9
(1.8)
A 		22.4
(0.3)
A 		7.4
(-2.2)
A 		38.9
(3)
A 		14.1
(-1.1)
A 		36
avr 16.8
(-3) 		22.9
(-1.6) 		43.5
(3) 		16.6
(-3) 		32
(0.4) 		17
(-2.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.2
(-2.9)
A 		1.6
(-2.7)
A 		12.6
(3)
A 		1.1
(-3)
A 		12
B 4.5
(-0.1)
A 		1.2
(-3)
A 		6.5
(1.7)
A 		8
(3)
A 		7
C 0.9
(-3)
A 		2.3
(-2.2)
A 		11.5
(3)
A 		9.9
(2.1)
A 		11
avr 2.2
(-2.6) 		1.7
(-3) 		10.2
(3) 		6.3
(0.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.5
(1.9)
A 		3.2
(-1.9)
A 		6.5
(1.9)
A 		2.2
(-3)
A 		7.5
(3)
A 		6.4
(1.8)
A 		5
B 4.4
(-2.8)
A 		9.2
(-0.9)
A 		19
(3)
A 		9
(-1)
A 		13.1
(0.6)
A 		4
(-3)
A 		15
C 0.9
(-3)
A 		9.7
(1.5)
A 		5.7
(-0.5)
A 		1.5
(-2.7)
A 		12.6
(3)
A 		4.7
(-1.1)
A 		12
avr 3.9
(-3) 		7.4
(-0.1) 		10.4
(2.4) 		4.2
(-2.8) 		11.1
(3) 		5
(-2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18721
Sequence Type Exemplar sequence
Representative Public ID Y73E7A.D NCBI
Target Description Y73E7A.D /REP_DB=WormBase Gene ID /WP=CE26414 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23386.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058468 NCBI Caenorhabditis elegans Y73E7A.5 (Y73E7A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000005641 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1600571:1601497:-1 11/11 None
SNAP00000005638 ENSEMBL cdna:SNAP chromosome:CEL140:I:1600625:1626584:-1 10/11 None
Y73E7A.5 ENSEMBL cdna:known chromosome:CEL140:I:1600625:1601497:-1 gene:Y73E7A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1600624-1601497(-) 98.54 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73E7A.5
Entrez Gene 190667 Entrez gene
SwissProt Q9GUM6 EMBL-EBI
WormBase CE26414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23384 Bt (bacillus thuringiensis) toxin resistant protein 4 [Caenorhabditis elegans] ref|NP_490872.1| BT (Bacillus thuringiensis) toxin REsistant family member (bre-4) [Caenorhabditis elegans] gb|AAS21308.1| BRE-4 [Caenorhabditis elegans] gb|AAM95168.1| UDPGalNAc:GlcNAc{beta}-R {beta}1,4-N-acetylgalactosaminyltransferase [Caenorhabditis elegans] 0.0
blast CAE74432 Hypothetical protein CBG22165 [Caenorhabditis briggsae] 0.0
blast AAG23386 Hypothetical protein Y73E7A.5 [Caenorhabditis elegans] ref|NP_490869.1| Y73E7A.5 [Caenorhabditis elegans] 1.0E-135
blast AAG23386 Hypothetical protein Y73E7A.5 [Caenorhabditis elegans] ref|NP_490869.1| Y73E7A.5 [Caenorhabditis elegans] 1.0E-110
blast AAB95008 Hypothetical protein T04B8.2 [Caenorhabditis elegans] ref|NP_493775.1| T04B8.2 [Caenorhabditis elegans] 5.0E-68
blast NP_493753 T27A1.2 [Caenorhabditis elegans] gb|AAB71043.2| Hypothetical protein T27A1.2 [Caenorhabditis elegans] 2.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR009598 EMBL-EBI Bladder cancer-related BC10 2.5E-29
Pfam IPR003859 EMBL-EBI Metazoa galactosyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005638 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:176896_AT
aaatgccatttcctcaagtttctaggagaaggatcgtacattaccacagaggatatgaaa
tttatattgaagaattttaatttgaaatatggattcctgactcgctctctacgcagaacc
aagattgatataaaactgttggtcaatattccacgtttggatttcgaaaaaagcccagga
ttaacactggacgatttgaaaatgatgaattgcgagaagatgagattttatgatctcaat
acaatcaaggcaagagaaatcaataagtacattcgttattggttagacgggaacctacca
aacctgagaagacttcaattgaactattggtggcatcattgggcgggcgacttattgtat
ggcttaccatattccaaatggaatccgaaacgtcgagcaagaatattctgcgatgatctt
gaattcgtggattgctcatatggacgtgatatcgaaagaagtgatggtctattagcaact
attctcattgaaaactttgccatgtattttctcgtatggcatgatagatttccgacggat
cctcgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCCATTTCCTCAAGTTTCTAG 217 119 103 Antisense
GAAGGATCGTACATTACCACAGAGG 72 333 130 Antisense
AAATATGGATTCCTGACTCGCTCTC 555 115 187 Antisense
TCGCTCTCTACGCAGAACCAAGATT 339 599 204 Antisense
GTTGGTCAATATTCCACGTTTGGAT 231 331 240 Antisense
TAGACGGGAACCTACCAAACCTGAG 112 639 386 Antisense
TATTGGTGGCATCATTGGGCGGGCG 102 661 427 Antisense
GGGCGGGCGACTTATTGTATGGCTT 92 493 443 Antisense
GATGGTCTATTAGCAACTATTCTCA 584 407 565 Antisense
AACTTTGCCATGTATTTTCTCGTAT 186 139 595 Antisense
TAGATTTCCGACGGATCCTCGAACA 458 653 627 Antisense
Sequence Source Affymetrix Proprietary Database