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[176895_s_at]

Description C46H11.4 /REP_DB=WormBase Gene ID /WP=CE08786 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99883.1
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 73      6grp_total > 47      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 743
1 2 3 4 range
A 831.8
(0.2)
P 		446.1
(-3)
P 		441.3
(-3)
P 		1164
(3)
P 		723
B 748.6
(-0.5)
P 		446
(-3)
P 		571.4
(-2)
P 		1184.3
(3)
P 		738
C 958.1
(1.8)
P 		584.1
(-2.1)
P 		497.3
(-3)
P 		1071.3
(3)
P 		574
avr 846.2
(0.3) 		492.1
(-3) 		503.3
(-2.9) 		1139.9
(3) 		648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 566.1
(0.6)
P 		661.8
(2.3)
P 		441.5
(-1.8)
P 		429
(-2)
P 		374.6
(-3)
P 		697.7
(3)
P 		323
B 548.7
(1.7)
P 		517.4
(0.9)
P 		468.1
(-0.2)
P 		351.1
(-3)
P 		549.8
(1.7)
P 		604.2
(3)
P 		253
C 718.1
(3)
P 		509
(-1.1)
P 		411.7
(-3)
P 		410
(-3)
P 		515.9
(-0.9)
P 		643.6
(1.5)
P 		308
avr 611
(2.1) 		562.7
(1) 		440.4
(-2) 		396.7
(-3) 		480.1
(-1) 		648.5
(3) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 302.9
(3)
P 		96.8
(-3)
P 		115.4
(-2.5)
P 		170.4
(-0.9)
P 		206
B 238.7
(2.4)
P 		110.2
(-3)
P 		132.4
(-2.1)
P 		252.4
(3)
P 		142
C 317.2
(3)
P 		167.9
(-3)
P 		173.3
(-2.8)
P 		180.6
(-2.5)
P 		149
avr 286.3
(3) 		125
(-3) 		140.4
(-2.4) 		201.1
(-0.2) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 104.4
(-2.6)
P 		235.4
(3)
P 		96.2
(-3)
P 		108.8
(-2.5)
P 		113
(-2.3)
P 		169.9
(0.2)
P 		139
B 190.9
(1.4)
P 		172.2
(0.6)
P 		113.7
(-2.1)
P 		93
(-3)
P 		223.4
(2.9)
P 		225.3
(3)
P 		132
C 266.2
(3)
P 		155.3
(-0.6)
P 		104.8
(-2.3)
P 		82.5
(-3)
P 		166.9
(-0.2)
P 		215.5
(1.3)
P 		184
avr 187.2
(2.1) 		187.6
(2.1) 		104.9
(-2.4) 		94.8
(-3) 		167.8
(1) 		203.6
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176895_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1408
Sequence Type Exemplar sequence
Representative Public ID C46H11.4 NCBI
Target Description C46H11.4 /REP_DB=WormBase Gene ID /WP=CE08786 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99883.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025878(11), NM_001025877(11), NM_001025876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025878 NCBI Caenorhabditis elegans Let-23 Fertility effector/regulator family member (lfe-2) (lfe-2) mRNA, complete cds. 11/11 None
NM_001025877 NCBI Caenorhabditis elegans Let-23 Fertility effector/regulator family member (lfe-2) (lfe-2) mRNA, complete cds. 11/11 None
NM_001025876 NCBI Caenorhabditis elegans Let-23 Fertility effector/regulator family member (lfe-2) (lfe-2) mRNA, complete cds. 11/11 None
GENEFINDER00000043160 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5028864:5040765:1 11/11 None
SNAP00000043103 ENSEMBL cdna:SNAP chromosome:CEL140:I:5037391:5040765:1 11/11 None
C46H11.4c ENSEMBL cdna:known chromosome:CEL140:I:5027155:5041157:1 gene:C46H11.4 11/11 A 
C46H11.4b ENSEMBL cdna:known chromosome:CEL140:I:5035818:5041157:1 gene:C46H11.4 11/11 A 
C46H11.4a ENSEMBL cdna:known chromosome:CEL140:I:5036977:5041157:1 gene:C46H11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5037435-5039972(+) 97.26 100.0
Public Domain and Genome References
Ensembl C46H11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99884 Let-23 fertility effector/regulator protein 2, isoform c [Caenorhabditis elegans] ref|NP_001021049.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38962 inositol trisphosphate 3-kinase form 3 [Caenorhabditis elegans] 0.0
blast AAK71361 Let-23 fertility effector/regulator protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021048.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38961 inositol trisphosphate 3-kinase form 2 [Caenorhabditis elegans] 0.0
blast CAE65715 Hypothetical protein CBG10794 [Caenorhabditis briggsae] 0.0
blast AAK71360 Let-23 fertility effector/regulator protein 2, isoform a [Caenorhabditis elegans] ref|NP_001021047.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38960 inositol trisphosphate 3-kinase form 1 [Caenorhabditis elegans] 0.0
blast T25639 hypothetical protein C46H11.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176895_S_AT
atgaccccacaaaaaccgcaattatggacatcaaaatcggaacaaggacatttttggaat
cagaagtatcaaacaccaaaaaacgggctgatctttacgaaaaaatggttgcgattgata
atgacgagccgacagaagaggagagaaagtgtggagcaatcacaaaattacgatacatgc
agtttagggaacgagagagcagcactgcacagctcggatttcgaattgaggcagccaaga
ggctcgaaggcgcattggagaaaaacttcaaaaaagtacgaacagttgaagatgtcacaa
ctacatttatggacttctttggaactcaaagaagccgtgtaagacaacaattaattgaac
gactgaaatcaatgcgaaaagccatcgaacattcatcattcttcaattcacatgaagtcg
tcggaagcagtattctgattgtttttgatacggaaaaagtgggatgctggatgattgact
ttgcaaagagttcaccggttcctaatggacgaacactaaaccatcggacgacgtggatac
ctgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACCCCACAAAAACCGCAATTAT 484 43 851 Antisense
AGGGAACGAGAGAGCAGCACTGCAC 640 57 1036 Antisense
GCACTGCACAGCTCGGATTTCGAAT 514 315 1052 Antisense
GGCAGCCAAGAGGCTCGAAGGCGCA 649 535 1080 Antisense
GTCACAACTACATTTATGGACTTCT 355 465 1144 Antisense
GCCATCGAACATTCATCATTCTTCA 326 281 1231 Antisense
GAAGTCGTCGGAAGCAGTATTCTGA 112 337 1264 Antisense
GTGGGATGCTGGATGATTGACTTTG 273 489 1309 Antisense
AGAGTTCACCGGTTCCTAATGGACG 236 57 1337 Antisense
GACGAACACTAAACCATCGGACGAC 539 377 1358 Antisense
ATCGGACGACGTGGATACCTGGGAA 309 33 1373 Antisense
Sequence Source Affymetrix Proprietary Database