[Home] | [Total List]

[176894_at]

Description Y24D9A.B /REP_DB=WormBase Gene ID /WP=CE21457 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60463.1
Cluster 6grp_total > 55      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 23.7
(0.1)
A 		39.4
(3)
A 		14.3
(-1.6)
A 		6.6
(-3)
A 		33
B 35.4
(-0.9)
A 		48.9
(3)
A 		41.1
(0.7)
A 		28.3
(-3)
A 		21
C 24.1
(-3)
A 		26.3
(-2.5)
A 		33.7
(-0.9)
A 		50.9
(3)
M 		27
avr 27.7
(-3) 		38.2
(3) 		29.7
(-1.9) 		28.6
(-2.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 65.5
(3)
A 		15.4
(-1.9)
A 		35.5
(0)
A 		4.7
(-3)
A 		5.2
(-3)
A 		37
(0.2)
P 		61
B 38.3
(3)
A 		22.2
(-0)
A 		24
(0.3)
A 		34.6
(2.3)
P 		6.5
(-3)
A 		36
(2.6)
M 		32
C 1.2
(-3)
A 		25.8
(-0.4)
A 		57.9
(3)
A 		55
(2.7)
P 		1.7
(-2.9)
A 		31.5
(0.2)
A 		57
avr 35
(2.3) 		21.1
(-0.1) 		39.1
(3) 		31.4
(1.7) 		4.5
(-3) 		34.8
(2.3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.6
(3)
A 		8.6
(3)
A 		3.7
(-0.9)
A 		1
(-3)
A 		8
B 11.3
(2.2)
A 		12.1
(3)
A 		9.5
(0.4)
A 		6
(-3)
A 		6
C 8
(-2.4)
A 		7.6
(-3)
A 		11.8
(3)
A 		8.6
(-1.6)
M 		4
avr 9.3
(2.9) 		9.4
(3) 		8.3
(1.4) 		5.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 12.1
(3)
A 		5.5
(-0.6)
A 		7.7
(0.6)
A 		1.2
(-3)
A 		1.6
(-2.8)
A 		9
(1.3)
P 		11
B 13.3
(2.9)
A 		7.4
(-0.3)
A 		5.8
(-1.2)
A 		9.2
(0.7)
P 		2.6
(-3)
A 		13.4
(3)
M 		11
C 0.5
(-3)
A 		7.9
(0.1)
A 		14.7
(3)
A 		11.1
(1.5)
P 		0.5
(-3)
A 		10.5
(1.2)
A 		14
avr 8.6
(1.5) 		6.9
(0.4) 		9.4
(2) 		7.2
(0.6) 		1.6
(-3) 		11
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19298
Sequence Type Exemplar sequence
Representative Public ID Y24D9A.B NCBI
Target Description Y24D9A.B /REP_DB=WormBase Gene ID /WP=CE21457 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60463.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068156 NCBI Caenorhabditis elegans Y24D9A.6 (Y24D9A.6) mRNA, complete cds. 11/11 None
Y24D9A.6 ENSEMBL cdna:known chromosome:CEL140:IV:4399872:4400393:-1 gene:Y24D9A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4399877-4400399(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y24D9A.6
Entrez Gene 189531 Entrez gene
SwissProt Q9N556 EMBL-EBI
WormBase CE21457 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60463 Hypothetical protein Y24D9A.6 [Caenorhabditis elegans] ref|NP_500557.1| Y24D9A.6 [Caenorhabditis elegans] 5.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500557.1 1 26-48
Y24D9A.6 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:176894_AT
attcattttttgcctaattttcatgtgttcttcacctttaaaaaaaattttctacagtaa
aacatgttttactcattttttgagttttttgttccaattttttctaaactccataattga
ccaattggcgaaagttttgaaattcggcaactgtcgaaaattttcaatttttataaaatc
aatttgccaattttccatttccatatatacatcttccgtgtgggcgaaaacgaacgtact
gtcaaagaatcgagtgaaaaggaatgtacttgataggtgtctctgtgtgtgcttggaaag
gaagaagaagaagaagaaaggaatatactgtcatcacaaaacgacagtaggagaaggaga
agacgacgaggacgaggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCATTTTTTGCCTAATTTTCATG 611 11 42 Antisense
AATTTTCATGTGTTCTTCACCTTTA 458 175 57 Antisense
TCCAATTTTTTCTAAACTCCATAAT 44 587 134 Antisense
GCCAATTTTCCATTTCCATATATAC 306 277 227 Antisense
CCATTTCCATATATACATCTTCCGT 591 269 236 Antisense
ATACATCTTCCGTGTGGGCGAAAAC 631 21 248 Antisense
GTGGGCGAAAACGAACGTACTGTCA 431 487 261 Antisense
GAATGTACTTGATAGGTGTCTCTGT 611 331 303 Antisense
GTGTCTCTGTGTGTGCTTGGAAAGG 170 485 318 Antisense
GAAAGGAATATACTGTCATCACAAA 72 361 357 Antisense
GGAGAAGACGACGAGGACGAGGACG 401 517 397 Antisense
Sequence Source Affymetrix Proprietary Database