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[176893_at]

Description Y24D9A.G /REP_DB=WormBase Gene ID /WP=CE21462 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60468.1
Cluster 4grp_high_8_8 > 29      6grp_total > 87      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 87.9
(-2.7)
P 		115.4
(0.2)
P 		84.7
(-3)
A 		141.4
(3)
A 		57
B 78.6
(-3)
A 		121.7
(1.5)
A 		119.7
(1.3)
P 		136.1
(3)
P 		58
C 64.3
(-3)
P 		75.1
(-2.2)
A 		73.9
(-2.3)
P 		149.2
(3)
P 		85
avr 76.9
(-3) 		104.1
(-0.5) 		92.8
(-1.5) 		142.2
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 126.1
(0)
A 		61.4
(-2.8)
A 		56.9
(-3)
A 		124.7
(-0)
A 		159.6
(1.5)
P 		194.4
(3)
P 		138
B 101.9
(-1.6)
P 		94
(-1.8)
P 		54.1
(-2.9)
A 		51
(-3)
A 		110.1
(-1.4)
P 		266.7
(3)
P 		216
C 42.8
(-3)
A 		92.9
(-0.9)
P 		88.1
(-1.1)
M 		127.3
(0.5)
A 		114.9
(0)
P 		186.7
(3)
P 		144
avr 90.3
(-2) 		82.8
(-2.3) 		66.4
(-3) 		101
(-1.6) 		128.2
(-0.5) 		215.9
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 32
(3)
P 		25
(-0.7)
P 		22.1
(-2.3)
A 		20.7
(-3)
A 		11
B 25.1
(-3)
A 		30.1
(3)
A 		27.7
(0.1)
P 		29
(1.7)
P 		5
C 21.3
(-3)
P 		21.6
(-2.6)
A 		25.8
(3)
P 		25.2
(2.2)
P 		5
avr 26.1
(3) 		25.6
(0.3) 		25.2
(-1.9) 		25
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 23.2
(-1.2)
A 		21.8
(-1.4)
A 		12.4
(-3)
A 		31.6
(0.2)
A 		48.1
(3)
P 		47.3
(2.9)
P 		36
B 35.5
(-1.4)
P 		31.3
(-1.7)
P 		13.1
(-3)
A 		13.5
(-3)
A 		44.7
(-0.8)
P 		99.5
(3)
P 		86
C 15.9
(-3)
A 		28.3
(-1.4)
P 		22.4
(-2.2)
M 		25.6
(-1.8)
A 		37.2
(-0.3)
P 		62.5
(3)
P 		47
avr 24.9
(-2) 		27.1
(-1.8) 		16
(-3) 		23.6
(-2.2) 		43.3
(0) 		69.8
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176893_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19258
Sequence Type Exemplar sequence
Representative Public ID Y24D9A.G NCBI
Target Description Y24D9A.G /REP_DB=WormBase Gene ID /WP=CE21462 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60468.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068154 NCBI Caenorhabditis elegans Y24D9A.2 (Y24D9A.2) mRNA, complete cds. 11/11 None
SNAP00000027689 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4390861:4393147:1 11/11 None
GENEFINDER00000027693 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4390861:4393147:1 11/11 None
Y24D9A.2 ENSEMBL cdna:known chromosome:CEL140:IV:4390846:4393147:1 gene:Y24D9A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182462 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014020 3/11 Cross Hyb Matching Probes None
SNAP00000014002 3/11 Cross Hyb Matching Probes None
Y108F1.2 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4389821-4393153(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y24D9A.2
Entrez Gene 177204 Entrez gene
SwissProt Q966C5 EMBL-EBI
WormBase CE33849 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84599 Hypothetical protein Y24D9A.2 [Caenorhabditis elegans] ref|NP_500555.2| Y24D9A.2 [Caenorhabditis elegans] 0.0
blast CAB02841 Hypothetical protein C41G7.4 [Caenorhabditis elegans] ref|NP_492529.1| Temporarily Assigned Gene name family member (tag-328) [Caenorhabditis elegans] 1.0E-106
blast CAE58524 Hypothetical protein CBG01676 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 2.3E-22
Sequence
Target Sequence 
>C. ELEGANS:176893_AT
aatgatccggccgtcggattcgttgtccgctcaacagtcatgattccggctggcacgcca
ctcatggagtttacgggcgagattgtcgagctgaagaatatggagctcgataatagagac
tacgcgtatcaaatcacgtatagcgacgatgtaaagttccggaggcttctccaggaggtg
aaattcagcaaggaatacacgaagcttctcgaaaaattgtctagaaaaaggttcttcatc
gatccgaaaattcacggaaatgttgcgcgaactgtcgggcacgcttgtgctccaaacatg
gaagttgtccgagttttccagaaaagtctttccccggctcatctgcatctggtacttgtc
acactggaagatgtattcccttccgttccgctaacaattgactacggaaagacgtacacg
gacgtcctgaaagatcgttgtcgatgtagaacttttgcgtgccgacgtggcgaacatgtg
aaaacatataaaaatttcgaaacggcccagcttgctcactgcctgaaaaagatccacgac
actcggtacgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGATCCGGCCGTCGGATTCGTTG 567 163 1309 Antisense
ATTCGTTGTCCGCTCAACAGTCATG 436 5 1326 Antisense
CAACAGTCATGATTCCGGCTGGCAC 320 189 1340 Antisense
GATGTAAAGTTCCGGAGGCTTCTCC 349 397 1456 Antisense
AAATGTTGCGCGAACTGTCGGGCAC 207 121 1566 Antisense
GCACGCTTGTGCTCCAAACATGGAA 446 315 1587 Antisense
ATCTGCATCTGGTACTTGTCACACT 168 33 1649 Antisense
GGAAGATGTATTCCCTTCCGTTCCG 171 527 1674 Antisense
GATGTAGAACTTTTGCGTGCCGACG 357 409 1751 Antisense
CAGCTTGCTCACTGCCTGAAAAAGA 495 203 1816 Antisense
AAGATCCACGACACTCGGTACGATA 523 153 1837 Antisense
Sequence Source Affymetrix Proprietary Database