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[176890_at]

Description Y23H5B.H /REP_DB=WormBase Gene ID /WP=CE23009 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60461.1
Cluster 6grp_total > 97      4grp_total > 43      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 11.4
(3)
A 		0.9
(-3)
A 		2.3
(-2.2)
A 		1.9
(-2.4)
A 		11
B 0.5
(-3)
A 		1
(-2.8)
A 		12.8
(3)
A 		1.9
(-2.3)
A 		12
C 12
(-2.6)
A 		37.9
(3)
A 		10.3
(-3)
A 		21.9
(-0.5)
A 		28
avr 8
(-3) 		13.3
(3) 		8.5
(-2.4) 		8.6
(-2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.3
(-2.6)
A 		1.2
(-3)
A 		5
(-1.8)
A 		12.3
(0.6)
A 		19.7
(3)
A 		7.7
(-0.9)
A 		19
B 7.6
(0.3)
A 		1
(-2.8)
A 		7.4
(0.2)
A 		0.6
(-3)
A 		2.1
(-2.3)
A 		13.5
(3)
A 		13
C 1.7
(-2.8)
A 		1.4
(-3)
A 		7.1
(-0.1)
A 		1.4
(-3)
A 		2.9
(-2.2)
A 		13
(3)
A 		12
avr 3.9
(-1.4) 		1.2
(-3) 		6.5
(0.1) 		4.8
(-0.9) 		8.2
(1.1) 		11.4
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.2
(3)
A 		0.2
(-3)
A 		0.6
(-2.4)
A 		0.3
(-2.9)
A 		4
B 0.1
(-3)
A 		0.2
(-2.8)
A 		3
(3)
A 		0.4
(-2.4)
A 		3
C 4
(-2.7)
A 		10.9
(3)
A 		3.6
(-3)
A 		3.7
(-2.9)
A 		7
avr 2.8
(0.4) 		3.8
(3) 		2.4
(-0.7) 		1.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.4
(-3)
A 		1.1
(-2.2)
A 		3.1
(-0.1)
A 		5.9
(3)
A 		1.9
(-1.4)
A 		6
B 2.7
(0.1)
A 		0.3
(-2.9)
A 		1.8
(-1)
A 		0.2
(-3)
A 		0.9
(-2.1)
A 		5
(3)
A 		5
C 0.6
(-2.6)
A 		0.4
(-2.9)
A 		1.8
(-0.8)
A 		0.3
(-3)
A 		0.9
(-2.1)
A 		4.4
(3)
A 		4
avr 1.2
(-1.6) 		0.4
(-3) 		1.6
(-0.9) 		1.2
(-1.6) 		2.6
(0.9) 		3.8
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18695
Sequence Type Exemplar sequence
Representative Public ID Y23H5B.H NCBI
Target Description Y23H5B.H /REP_DB=WormBase Gene ID /WP=CE23009 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60461.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058596 NCBI Caenorhabditis elegans Y23H5B.1 (Y23H5B.1) mRNA, complete cds. 11/11 None
SNAP00000000934 ENSEMBL cdna:SNAP chromosome:CEL140:I:2553095:2557422:1 9/11 None
Y23H5B.1 ENSEMBL cdna:known chromosome:CEL140:I:2553095:2557426:1 gene:Y23H5B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000939 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2553094-2557426(+) 99.91 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23H5B.1
Entrez Gene 189524 Entrez gene
SwissProt Q9N471 EMBL-EBI
WormBase CE23009 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60461 Hypothetical protein Y23H5B.1 [Caenorhabditis elegans] ref|NP_490997.1| Y23H5B.1 [Caenorhabditis elegans] 0.0
blast AAF60461 Hypothetical protein Y23H5B.1 [Caenorhabditis elegans] ref|NP_490997.1| Y23H5B.1 [Caenorhabditis elegans] 1.0E-180
blast AAB54193 Hypothetical protein C55C2.3 [Caenorhabditis elegans] ref|NP_490999.2| C55C2.3 [Caenorhabditis elegans] 1.0E-33
blast AAB54193 Hypothetical protein C55C2.3 [Caenorhabditis elegans] ref|NP_490999.2| C55C2.3 [Caenorhabditis elegans] 4.0E-29
blast CAE60535 Hypothetical protein CBG04162 [Caenorhabditis briggsae] 3.0E-24
blast AAB54196 Hypothetical protein C55C2.4 [Caenorhabditis elegans] ref|NP_490998.2| C55C2.4 [Caenorhabditis elegans] 5.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490997.1 2 286-308,338-357
Y23H5B.1 2 286-308,338-357
SNAP00000000934 2 301-323,353-372
Sequence
Target Sequence 
>C. ELEGANS:176890_AT
gtggaattccgtacatgtgagctgacagaagatacaattcgagacatttttaaggtgtac
tgtcaggcgaagagttatgtaccacttgcattaaatatttggattcctcctccatttcta
gaaggaagttatacatgggatttgaatcaagaatctccatataatagtgtaggcacgatt
cacagtttaccaaaaaaaattgcacttcagcgcctttaccacatggctcgtcaggcagaa
aatcaatatatggagaaatttcaacaactcaaaaatgagcaattggcgcaatctgagaaa
aaacgggatttggatgaattggaattttttcttcggagactaacaactttctgtttgtgg
atgatgtttggatcgtattcagttctagtaaccgtgtcaattattaaaactatctacttc
aatcattatttttatatcattcaatacgaagaaggtgatgatgacgaagtggacgaaata
atgcgacgagagcataaaataaataagtggttgtacaatatttccatgatcgtttttatt
att

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAATTCCGTACATGTGAGCTGA 179 491 517 Antisense
GGCGAAGAGTTATGTACCACTTGCA 701 539 582 Antisense
TTCCTCCTCCATTTCTAGAAGGAAG 60 699 620 Antisense
TAGGCACGATTCACAGTTTACCAAA 118 653 686 Antisense
AAAAAATTGCACTTCAGCGCCTTTA 472 129 710 Antisense
TTTACCACATGGCTCGTCAGGCAGA 349 671 731 Antisense
GAGACTAACAACTTTCTGTTTGTGG 482 393 852 Antisense
GATGTTTGGATCGTATTCAGTTCTA 567 409 879 Antisense
ATTCAGTTCTAGTAACCGTGTCAAT 217 11 893 Antisense
AAAACTATCTACTTCAATCATTATT 112 131 922 Antisense
TATTTCCATGATCGTTTTTATTATT 670 661 1035 Antisense
Sequence Source Affymetrix Proprietary Database