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[176889_at]

Description Y23H5B.F /REP_DB=WormBase Gene ID /WP=CE23007 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60459.1
Cluster 6grp_high1_10_10 > 45      4grp_high_8_8 > 12      6grp_total > 40      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 153.8
(-1.2)
P 		156.2
(-1.1)
P 		82.1
(-3)
A 		318.7
(3)
P 		237
B 118.5
(-2.2)
P 		143.9
(-1.5)
P 		92.3
(-3)
P 		295.3
(3)
P 		203
C 161
(-0.8)
P 		101
(-2.3)
P 		69.5
(-3)
P 		322.1
(3)
P 		253
avr 144.4
(-1.4) 		133.7
(-1.6) 		81.3
(-3) 		312
(3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 128.9
(0.9)
P 		170.8
(3)
P 		128.4
(0.9)
P 		96.2
(-0.7)
P 		49.3
(-3)
P 		95.2
(-0.7)
A 		122
B 96.8
(-2.6)
P 		100.2
(-2.1)
P 		113.1
(-0.1)
P 		133.9
(3)
P 		94
(-3)
P 		103.9
(-1.5)
P 		40
C 137.8
(0.5)
P 		137.4
(0.5)
P 		122.8
(-0.6)
A 		170.6
(3)
P 		90.7
(-3)
M 		109.4
(-1.6)
P 		80
avr 121.2
(1.5) 		136.1
(3) 		121.4
(1.5) 		133.6
(2.7) 		78
(-3) 		102.8
(-0.4) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 56
(3)
P 		33.9
(-0.8)
P 		21.5
(-3)
A 		46.7
(1.4)
P 		35
B 37.8
(-0.6)
P 		35.5
(-1)
P 		21.4
(-3)
P 		62.9
(3)
P 		42
C 53.3
(2.8)
P 		29
(-2)
P 		24.2
(-3)
P 		54.3
(3)
P 		30
avr 49
(2) 		32.8
(-1.1) 		22.4
(-3) 		54.6
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 23.8
(-1.8)
P 		60.7
(3)
P 		28
(-1.3)
P 		24.4
(-1.8)
P 		14.9
(-3)
P 		23.2
(-1.9)
A 		46
B 33.7
(0.3)
P 		33.4
(0.1)
P 		27.5
(-3)
P 		35.5
(1.2)
P 		38.2
(2.7)
P 		38.8
(3)
P 		11
C 51.1
(3)
P 		41.9
(0.5)
P 		31.3
(-2.4)
A 		34.3
(-1.6)
P 		29.3
(-3)
M 		36.6
(-1)
P 		22
avr 36.2
(-0.1) 		45.3
(3) 		28.9
(-2.5) 		31.4
(-1.7) 		27.5
(-3) 		32.9
(-1.2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18685
Sequence Type Exemplar sequence
Representative Public ID Y23H5B.F NCBI
Target Description Y23H5B.F /REP_DB=WormBase Gene ID /WP=CE23007 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60459.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058592 NCBI Caenorhabditis elegans Y23H5B.3 (Y23H5B.3) mRNA, complete cds. 11/11 None
SNAP00000000930 ENSEMBL cdna:SNAP chromosome:CEL140:I:2544774:2546154:1 9/11 None
GENEFINDER00000000936 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2544774:2546154:1 11/11 None
Y23H5B.3 ENSEMBL cdna:known chromosome:CEL140:I:2544774:2546154:1 gene:Y23H5B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2544773-2546154(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23H5B.3
Entrez Gene 189526 Entrez gene
SwissProt Q9N475 EMBL-EBI
WormBase CE23007 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60459 Hypothetical protein Y23H5B.3 [Caenorhabditis elegans] ref|NP_490993.1| Y23H5B.3 [Caenorhabditis elegans] 1.0E-112
blast AAF60459 Hypothetical protein Y23H5B.3 [Caenorhabditis elegans] ref|NP_490993.1| Y23H5B.3 [Caenorhabditis elegans] 3.0E-88
Sequence
Target Sequence 
>C. ELEGANS:176889_AT
gtttttgtttccttttcgattgcattttctgatgattgtgatggacattacgatctggag
tacggatgcaataaactttcgttggatttgattcgagactggatttcgaataagccgttg
ccctcagtcaaagcagcgcagtccctgtattcagattgcaggagagcgttgagctgtaca
aaatctctaaactgcgacaaaaaagacaacgaaatttcgaagaaaatcacggatctggac
gaactttgtaatggaattggcgcatttggatcatggtttggatattgtattccaaagatt
caaaatgccatcacattaatggagtggccgtgcttaagccattggaataatgcggcacaa
cttccaacatgcgagtatttcgaggctgacaatgaatgcaagacaatgccaatagaaaat
atatgcggcccccgtgccgtcaaagaaatgctggataatgagaattttattcgtgaatat
tttggatgcaacaggatctacaagccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTGTTTCCTTTTCGATTGCAT 218 449 37 Antisense
GGATTTCGAATAAGCCGTTGCCCTC 181 509 137 Antisense
TGCCCTCAGTCAAAGCAGCGCAGTC 614 583 155 Antisense
AGCGCAGTCCCTGTATTCAGATTGC 183 83 171 Antisense
AAATCACGGATCTGGACGAACTTTG 570 115 260 Antisense
GGAATTGGCGCATTTGGATCATGGT 681 533 289 Antisense
GGAGTGGCCGTGCTTAAGCCATTGG 136 517 357 Antisense
TAATGCGGCACAACTTCCAACATGC 18 635 384 Antisense
AATAGAAAATATATGCGGCCCCCGT 514 169 447 Antisense
CCCCCGTGCCGTCAAAGAAATGCTG 94 259 465 Antisense
GATGCAACAGGATCTACAAGCCTTC 526 411 521 Antisense
Sequence Source Affymetrix Proprietary Database