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[176884_at]

Description ZK616.J /REP_DB=WormBase Gene ID /WP=CE26612 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60950.1
Cluster 6grp_total > 59      4grp_total > 40      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 35.8
(2.7)
A 		13.3
(-3)
A 		37
(3)
A 		22.3
(-0.7)
A 		24
B 11.9
(-2.7)
A 		85
(3)
A 		64.3
(1.4)
A 		8.1
(-3)
A 		77
C 21.9
(-2.1)
A 		11.9
(-3)
A 		49.9
(0.4)
A 		79.7
(3)
A 		68
avr 23.2
(-3) 		36.7
(-0) 		50.4
(3) 		36.7
(-0) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 64.2
(2.1)
A 		10.2
(-3)
A 		31.6
(-1)
A 		61.8
(1.9)
A 		18.6
(-2.2)
A 		73.4
(3)
A 		63
B 84.9
(3)
A 		41.3
(-2.9)
A 		41.3
(-2.9)
A 		40.6
(-3)
A 		59.3
(-0.5)
A 		65.8
(0.4)
P 		44
C 7.3
(-3)
A 		67.6
(1.8)
A 		9.7
(-2.8)
A 		47.2
(0.2)
A 		54.9
(0.8)
A 		83.2
(3)
A 		76
avr 52.1
(0.2) 		39.7
(-1.4) 		27.5
(-3) 		49.9
(-0.1) 		44.3
(-0.8) 		74.1
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.1
(3)
A 		2.9
(-3)
A 		9.7
(1)
A 		3.3
(-2.8)
A 		10
B 3.8
(-2.3)
A 		21
(3)
A 		14.9
(1.1)
A 		1.7
(-3)
A 		19
C 7.2
(-1.4)
A 		3.4
(-3)
A 		17.4
(3)
A 		13.4
(1.3)
A 		14
avr 8
(-1.6) 		9.1
(-0.7) 		14
(3) 		6.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.8
(0.4)
A 		3.6
(-3)
A 		6.9
(-1.6)
A 		15.7
(2.1)
A 		5.6
(-2.2)
A 		17.9
(3)
A 		14
B 29.5
(3)
A 		13.7
(-1.9)
A 		10
(-3)
A 		10.8
(-2.8)
A 		24.1
(1.3)
A 		24.5
(1.5)
P 		20
C 2.7
(-3)
A 		20.6
(1.3)
A 		2.5
(-3)
A 		9.5
(-1.3)
A 		17.8
(0.6)
A 		27.8
(3)
A 		25
avr 14.7
(-0.1) 		12.6
(-0.8) 		6.5
(-3) 		12
(-1) 		15.8
(0.3) 		23.4
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19263
Sequence Type Exemplar sequence
Representative Public ID ZK616.J NCBI
Target Description ZK616.J /REP_DB=WormBase Gene ID /WP=CE26612 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60950.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068404 NCBI Caenorhabditis elegans ZK616.1 (ZK616.1) mRNA, complete cds. 11/11 None
SNAP00000016318 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5405685:5407321:1 11/11 None
GENEFINDER00000016328 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5405685:5407321:1 11/11 None
ZK616.1 ENSEMBL cdna:known chromosome:CEL140:IV:5403114:5407321:1 gene:ZK616.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5403119-5407327(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK616.1
Entrez Gene 191358 Entrez gene
SwissProt Q9N4N0 EMBL-EBI
WormBase CE26612 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60950 Hypothetical protein ZK616.1 [Caenorhabditis elegans] ref|NP_500805.1| ZK616.1 [Caenorhabditis elegans] 0.0
blast CAE72710 Hypothetical protein CBG19947 [Caenorhabditis briggsae] 1.0E-123
blast AAF60950 Hypothetical protein ZK616.1 [Caenorhabditis elegans] ref|NP_500805.1| ZK616.1 [Caenorhabditis elegans] 4.0E-81
blast CAE72710 Hypothetical protein CBG19947 [Caenorhabditis briggsae] 3.0E-36
blast XP_447259 unnamed protein product [Candida glabrata] emb|CAG60192.1| unnamed protein product [Candida glabrata CBS138] 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.8E-7
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.9E-11
Sequence
Target Sequence 
>C. ELEGANS:176884_AT
aaaagagagcttccatctgctgaataccattcagttcgttacgatgaacggaatttgagt
cttcgaaaagcacaagttgagctgaaaactgcacaagaagctccagctgttcgagagaaa
ggagatgcaaatgatcgaacggataaagactgtgtcactcatccacacgatcttcagtct
acggaagaaccaacgacctctgattcaaattcacaagtgtcggaagatattcctccacca
aaaaataaggaatcaggaacacccccacttaaagaaaaaactcctgaaccaattccagaa
gaaccgaagaaagttgaggaagaagtgaagaagccagaagtaccaaagaatgaagagccg
aaaatggaggaaccagtgaaagaagaagcaccaaaagtagaggaaaagaaggaagaggtg
aaaatggttgaggacccaaaagtagaatcaccattggaagtgaagaagatgaagaagaga
attcagataaatgtgaaacgttatccggatagtggagaactgacaattctcaccgaaaag
gatggaatggttagcttcacgtgttcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGAGAGCTTCCATCTGCTGAAT 75 133 877 Antisense
GAATACCATTCAGTTCGTTACGATG 82 327 898 Antisense
GCACAAGAAGCTCCAGCTGTTCGAG 306 317 967 Antisense
TAAAGACTGTGTCACTCATCCACAC 313 641 1020 Antisense
ATCCACACGATCTTCAGTCTACGGA 243 41 1037 Antisense
GAAGAACCAACGACCTCTGATTCAA 253 341 1060 Antisense
GTGTCGGAAGATATTCCTCCACCAA 356 487 1093 Antisense
ATAAGGAATCAGGAACACCCCCACT 241 25 1121 Antisense
GAAAAAACTCCTGAACCAATTCCAG 154 353 1150 Antisense
GAGGACCCAAAAGTAGAATCACCAT 132 403 1306 Antisense
GAATGGTTAGCTTCACGTGTTCAAC 194 333 1421 Antisense
Sequence Source Affymetrix Proprietary Database