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[176883_at]

Description F11D5.1 /REP_DB=WormBase Gene ID /WP=CE25853 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99908.1
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_high_8_8 > 41      6grp_highest_nonorm > 90      6grp_total > 15      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 213.6
(3)
P 		157
(-0.5)
P 		169
(0.3)
P 		115.4
(-3)
M 		98
B 266.7
(3)
P 		227.3
(1.4)
P 		174.3
(-0.8)
P 		119
(-3)
P 		148
C 250.7
(3)
P 		172.5
(-2.2)
P 		161.3
(-3)
P 		170.2
(-2.4)
P 		89
avr 243.7
(3) 		185.6
(-0.2) 		168.2
(-1.2) 		134.9
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 223.5
(1.7)
P 		252.7
(3)
P 		144.5
(-1.6)
P 		167.4
(-0.7)
P 		127.9
(-2.4)
P 		112.8
(-3)
P 		140
B 241.6
(3)
P 		162.9
(-0.8)
P 		134
(-2.1)
P 		139.4
(-1.9)
P 		135.8
(-2.1)
P 		116.1
(-3)
P 		126
C 235.3
(3)
P 		205.7
(1.4)
P 		216.3
(2)
P 		126
(-3)
P 		160.4
(-1.1)
P 		126.4
(-3)
P 		109
avr 233.5
(3) 		207.1
(1.6) 		164.9
(-0.6) 		144.3
(-1.6) 		141.4
(-1.8) 		118.4
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 77.8
(3)
P 		34.1
(-1.3)
P 		44.2
(-0.3)
P 		16.9
(-3)
M 		61
B 85
(3)
P 		56.1
(0.1)
P 		40.4
(-1.5)
P 		25.4
(-3)
P 		60
C 83
(3)
P 		49.6
(-0.7)
P 		56.2
(0)
P 		28.7
(-3)
P 		54
avr 81.9
(3) 		46.6
(-0.6) 		46.9
(-0.6) 		23.7
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 41.2
(-1.7)
P 		89.9
(3)
P 		31.5
(-2.6)
P 		42.4
(-1.6)
P 		38.6
(-1.9)
P 		27.5
(-3)
P 		62
B 84.1
(3)
P 		54.2
(-0.5)
P 		32.5
(-3)
P 		36.9
(-2.5)
P 		55.2
(-0.4)
P 		43.3
(-1.7)
P 		52
C 87.2
(3)
P 		62.8
(0.6)
P 		55
(-0.1)
P 		25.3
(-3)
P 		51.9
(-0.4)
P 		42.3
(-1.4)
P 		62
avr 70.8
(3) 		69
(2.7) 		39.7
(-2.2) 		34.9
(-3) 		48.6
(-0.7) 		37.7
(-2.5) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18499
Sequence Type Exemplar sequence
Representative Public ID F11D5.1 NCBI
Target Description F11D5.1 /REP_DB=WormBase Gene ID /WP=CE25853 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF99908.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076174 NCBI Caenorhabditis elegans F11D5.1a (F11D5.1) mRNA, complete cds. 11/11 A 
F11D5.1a ENSEMBL cdna:known chromosome:CEL140:X:3333118:3347240:1 gene:F11D5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180623 2 1 NM_076174 176883_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3333994-3341400(+) 98.53 100.0
Public Domain and Genome References
Ensembl F11D5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508575 F11D5.1a [Caenorhabditis elegans] gb|AAF99908.2| Hypothetical protein F11D5.1a [Caenorhabditis elegans] 0.0
blast T16034 hypothetical protein F11D5.1 - Caenorhabditis elegans 0.0
blast CAE68411 Hypothetical protein CBG14189 [Caenorhabditis briggsae] 1.0E-154
Sequence
Target Sequence 
>C. ELEGANS:176883_AT
tatccctcaatattccgaagcagctaaaataatcagagagacgtgtgacattgcagtttt
gccatctgatccccattctgcaagagtctccatacaaccaattccatcaattataagtga
aaacagcagccgttcgacgactcctgtcaaggcaagccccccaccagaggagccaaagcc
gaatgtgttagaaacgtacgcgcaatacaggaaaactgttgttgatatatcatctaccga
tagaacatcagctgtgaatagtgtcttcaagtacgacaatttatcgccagctgtcaagag
tccaataagtagcaatctttggaaaccaactataaatagtccaacaatgtctaccaccga
atcaaccatctcgcctgtagcctcctcaccaactgcttcaaaacttccgttcgtttcgcg
caaagtggatgacgtcggcgccaagtcgatgatcacttcttcaaatgtggtgtccatatc
cgtcaaagctcctgtatccaaccggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCCTCAATATTCCGAAGCAGCT 51 659 1029 Antisense
AGACGTGTGACATTGCAGTTTTGCC 580 71 1067 Antisense
AAGAGTCTCCATACAACCAATTCCA 396 155 1110 Antisense
GTGAAAACAGCAGCCGTTCGACGAC 692 471 1145 Antisense
TTCGACGACTCCTGTCAAGGCAAGC 3 661 1161 Antisense
TTATCGCCAGCTGTCAAGAGTCCAA 328 679 1309 Antisense
ATAGTCCAACAATGTCTACCACCGA 395 19 1364 Antisense
TTCCGTTCGTTTCGCGCAAAGTGGA 366 685 1433 Antisense
CAAAGTGGATGACGTCGGCGCCAAG 387 191 1449 Antisense
GGCGCCAAGTCGATGATCACTTCTT 380 543 1465 Antisense
CAAAGCTCCTGTATCCAACCGGATT 591 189 1512 Antisense
Sequence Source Affymetrix Proprietary Database