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[176882_at]

Description Y43B11AL.1 /REP_DB=WormBase Gene ID /WP=CE28263 /GB=AAK68484.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.3
(-3)
A 		3.4
(-2.6)
A 		2.4
(-2.8)
A 		31.2
(3)
A 		30
B 4.2
(-1.6)
A 		5.8
(3)
A 		4.9
(0.4)
A 		3.7
(-3)
A 		2
C 2.6
(-2.9)
A 		3.6
(-2.6)
A 		2.4
(-3)
A 		19.9
(3)
A 		18
avr 2.7
(-3) 		4.3
(-2.4) 		3.2
(-2.8) 		18.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 22.9
(-0.9)
A 		1.5
(-3)
A 		4.9
(-2.7)
A 		2.4
(-2.9)
A 		3.1
(-2.8)
A 		61.6
(3)
A 		60
B 13.8
(-1.8)
A 		1.6
(-3)
A 		20
(-1.2)
A 		3.1
(-2.9)
A 		20.3
(-1.1)
A 		62
(3)
P 		60
C 1.4
(-3)
A 		21.5
(-1.3)
A 		4.5
(-2.7)
A 		5.2
(-2.7)
A 		3.7
(-2.8)
A 		71.9
(3)
P 		71
avr 12.7
(-2.1) 		8.2
(-2.6) 		9.8
(-2.4) 		3.6
(-3) 		9
(-2.5) 		65.2
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(-3)
A 		0.7
(-2.7)
A 		0.6
(-2.9)
A 		4.6
(3)
A 		4
B 1.3
(2)
A 		1.4
(3)
A 		1.1
(0)
A 		0.8
(-3)
A 		1
C 0.9
(-2.8)
A 		1
(-2.5)
A 		0.8
(-3)
A 		3.4
(3)
A 		3
avr 0.9
(-2.7) 		1
(-2.4) 		0.8
(-3) 		2.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.2
(-1.5)
A 		0.5
(-3)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		15
(3)
A 		15
B 4.8
(-1.9)
A 		0.5
(-3)
A 		4.8
(-1.9)
A 		0.8
(-2.9)
A 		8.2
(-1)
A 		23.1
(3)
P 		23
C 0.5
(-3)
A 		6.6
(-1.4)
A 		1.2
(-2.8)
A 		1.1
(-2.8)
A 		1.2
(-2.8)
A 		24.1
(3)
P 		24
avr 3.2
(-2.3) 		2.5
(-2.5) 		2.4
(-2.5) 		0.8
(-3) 		3.4
(-2.2) 		20.7
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9837
Sequence Type Exemplar sequence
Representative Public ID Y43B11AL.1 NCBI
Target Description Y43B11AL.1 /REP_DB=WormBase Gene ID /WP=CE28263 /GB=AAK68484.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068698 NCBI Caenorhabditis elegans Y43B11AL.1 (Y43B11AL.1) mRNA, complete cds. 11/11 None
Y43B11AL.1 ENSEMBL cdna:known chromosome:CEL140:IV:7065380:7068019:1 gene:Y43B11AL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7065385-7067951(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43B11AL.1
Entrez Gene 177479 Entrez gene
SwissProt Q965V6 EMBL-EBI
WormBase CE28263 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68484 Hypothetical protein Y43B11AL.1 [Caenorhabditis elegans] ref|NP_501099.1| Y43B11AL.1 [Caenorhabditis elegans] 0.0
blast CAE61793 Hypothetical protein CBG05756 [Caenorhabditis briggsae] 4.0E-66
blast CAA77589 Hypothetical protein F59B2.8 [Caenorhabditis elegans] ref|NP_498994.1| F59B2.8 [Caenorhabditis elegans] sp|P34483|YMJ8_CAEEL Hypothetical protein F59B2.8 in chromosome III 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.0E-6
Sequence
Target Sequence 
>C. ELEGANS:176882_AT
aactttacctgatcttctatctttgaactgcagatttggaagttttagaaaatttaatat
aaatcaaaatttattggaagcattctctaaaaattggttaaattcgaagagcaggacatt
ggagtttatgaagtttggattcccggagcacggtgtaagttttcaatggaacaagtctga
gttgccattgaaaccatggaatcctcaaataagatcgcgttattactatctgaaaaaaga
tctttcactggctggaatcgagaagtcatttggttcaaactacatcgattgctcggaagg
attggatattattcgttcagatggtctcacggcaacaatacttattcaagataattttga
taagaatatattgtttcttgtttggcgtgatcctcatcctgaaaattcaagaatcactga
attgaaagagcagatcttagtggaaatagatgcatacacagaagccaaaacccagcaaac
gaatccatactttacacacatttctgacagtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTACCTGATCTTCTATCTTTG 101 139 666 Antisense
GTTTGGATTCCCGGAGCACGGTGTA 680 441 798 Antisense
GGAACAAGTCTGAGTTGCCATTGAA 290 529 833 Antisense
AAGATCTTTCACTGGCTGGAATCGA 373 153 902 Antisense
GGTTCAAACTACATCGATTGCTCGG 623 505 937 Antisense
GATATTATTCGTTCAGATGGTCTCA 382 427 970 Antisense
GATGGTCTCACGGCAACAATACTTA 89 407 985 Antisense
ATTGTTTCTTGTTTGGCGTGATCCT 303 5 1035 Antisense
GCGTGATCCTCATCCTGAAAATTCA 159 293 1050 Antisense
AAACCCAGCAAACGAATCCATACTT 109 127 1133 Antisense
TTTACACACATTTCTGACAGTTTCA 324 673 1156 Antisense
Sequence Source Affymetrix Proprietary Database