[Home] | [Total List]

[176881_at]

Description Y43B11AL.3 /REP_DB=WormBase Gene ID /WP=CE25284 /GB=AAK68486.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 17      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 2
(-3)
A 		3.6
(-2.8)
A 		34.5
(1.6)
A 		44.2
(3)
A 		42
B 6
(-2.2)
A 		33.4
(3)
A 		1.5
(-3)
A 		4.3
(-2.5)
A 		32
C 13.5
(-2.9)
A 		16.3
(-2.6)
A 		12.3
(-3)
A 		80.7
(3)
A 		68
avr 7.2
(-3) 		17.8
(-1.2) 		16.1
(-1.5) 		43.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 6.9
(-0.4)
A 		2
(-3)
A 		12
(2.4)
A 		13.1
(3)
A 		5.8
(-0.9)
A 		3.3
(-2.3)
A 		11
B 1.6
(-3)
A 		32.6
(3)
A 		1.4
(-3)
A 		22.8
(1.1)
A 		25.8
(1.7)
A 		18.6
(0.3)
A 		31
C 14.4
(1.2)
A 		2.8
(-2.6)
A 		1.7
(-3)
A 		19.7
(3)
A 		13
(0.8)
A 		7.2
(-1.2)
A 		18
avr 7.6
(-1.8) 		12.5
(0.3) 		5
(-3) 		18.5
(3) 		14.9
(1.4) 		9.7
(-0.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.7
(-3)
A 		0.8
(-2.9)
A 		9
(3)
A 		6.5
(1.2)
A 		8
B 1.9
(-1.8)
A 		8.2
(3)
A 		0.4
(-3)
A 		0.9
(-2.6)
A 		8
C 4.5
(-2.9)
A 		4.7
(-2.7)
A 		4.3
(-3)
A 		13.6
(3)
A 		9
avr 2.4
(-3) 		4.6
(-0.1) 		4.6
(-0.1) 		7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-1.6)
A 		0.7
(-3)
A 		2.6
(1.4)
A 		3.3
(3)
A 		1.7
(-0.7)
A 		0.8
(-2.8)
A 		3
B 0.6
(-2.8)
A 		10.8
(3)
A 		0.3
(-3)
A 		6
(0.3)
A 		10.5
(2.8)
A 		6.9
(0.8)
A 		11
C 5.3
(3)
A 		0.8
(-2.5)
A 		0.4
(-3)
A 		4
(1.4)
A 		4.2
(1.7)
A 		2.4
(-0.6)
A 		5
avr 2.4
(-1.2) 		4.1
(1.1) 		1.1
(-3) 		4.4
(1.5) 		5.5
(3) 		3.4
(0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9650
Sequence Type Exemplar sequence
Representative Public ID Y43B11AL.3 NCBI
Target Description Y43B11AL.3 /REP_DB=WormBase Gene ID /WP=CE25284 /GB=AAK68486.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023670 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7060223:7061762:-1 None
Y43B11AL.3 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:7060176:7061762:-1 gene:Y43B11AL.3 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023667 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7060228-7063938(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y43B11AL.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE61792 Hypothetical protein CBG05755 [Caenorhabditis briggsae] 4.0E-24
blast NP_504900 Serpentine Receptor, class W family member (srw-67) [Caenorhabditis elegans] gb|AAK18931.2| Serpentine receptor, class w protein 67 [Caenorhabditis elegans] 4.0E-14
blast CAE71070 Hypothetical protein CBG17914 [Caenorhabditis briggsae] 9.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023670 5 15-34,55-77,123-142,170-192,207-229
Sequence
Target Sequence 
>C. ELEGANS:176881_AT
atcggagaatgttcacgtcggctgtctacgttacttggaatcttacttggatctattcgg
cttctcattgtgaaaagcacaataaatccaaaattaaatcattcttcaacgcaaatattt
ggaattaaaatatcatttttttgtactcgctgcaattattctcccggtttgacagttttc
ctagtgattgaactaaaaatggctaggaaaaaaatcagtatggctcaactaagaaatcct
aatgaaaagttggttttagcctgcactacttcagttaacaaactgttgaattttagaagt
aaaaccgatcggactacatttcttgtcactttaatgacaacaacatttatgcttgctgat
ggaccactcggagccataactgttgtccaaggaatccttattaatcaggaggtttttgaa
ccattaacaataatcacaacggtgttatcacttctcaaaatatttgtaacattcaattct
cttatccagtgccttatttctctcgcagtttctaaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGAGAATGTTCACGTCGGCTGT 130 35 466 Antisense
TCGGCTGTCTACGTTACTTGGAATC 430 603 483 Antisense
TTACTTGGATCTATTCGGCTTCTCA 655 683 508 Antisense
ATATCATTTTTTTGTACTCGCTGCA 213 21 595 Antisense
CTGCAATTATTCTCCCGGTTTGACA 240 211 615 Antisense
TGGTTTTAGCCTGCACTACTTCAGT 693 551 716 Antisense
AAACCGATCGGACTACATTTCTTGT 12 127 767 Antisense
TATGCTTGCTGATGGACCACTCGGA 270 655 813 Antisense
CTCGGAGCCATAACTGTTGTCCAAG 69 233 832 Antisense
ATCACAACGGTGTTATCACTTCTCA 550 27 898 Antisense
TATTTCTCTCGCAGTTTCTAACCAT 425 661 960 Antisense
Sequence Source Affymetrix Proprietary Database