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[176880_at]

Description Y57E12AL.4 /REP_DB=WormBase Gene ID /WP=CE26192 /GB=AAK71408.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 39.8
(0.9)
A 		54.8
(3)
A 		11.8
(-3)
A 		13.8
(-2.7)
A 		43
B 22.3
(-0.9)
A 		52.2
(3)
A 		6.5
(-3)
A 		46.8
(2.3)
A 		46
C 35.3
(3)
A 		29.2
(0.8)
A 		18.6
(-3)
A 		21.5
(-2)
A 		17
avr 32.5
(0.7) 		45.4
(3) 		12.3
(-3) 		27.4
(-0.3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 16.1
(-2.9)
A 		15.6
(-3)
A 		36.6
(3)
A 		30.9
(1.4)
A 		20.4
(-1.6)
A 		16.7
(-2.7)
A 		21
B 31.5
(1.5)
A 		23.7
(-0.1)
A 		38.7
(3)
A 		9.6
(-3)
A 		34.5
(2.1)
A 		21.2
(-0.6)
A 		29
C 19.7
(-1.4)
A 		54
(3)
A 		7.2
(-3)
A 		44.4
(1.8)
A 		10.8
(-2.5)
A 		28.5
(-0.3)
A 		47
avr 22.4
(-2.7) 		31.1
(3) 		27.5
(0.7) 		28.3
(1.2) 		21.9
(-3) 		22.1
(-2.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.5
(3)
A 		11.9
(1.8)
A 		3.1
(-2.5)
A 		2
(-3)
A 		13
B 7.1
(-0.1)
A 		12.9
(3)
A 		1.5
(-3)
A 		10
(1.5)
A 		11
C 11.7
(3)
A 		8.4
(0.6)
A 		6.5
(-0.9)
A 		3.6
(-3)
A 		8
avr 11.1
(3) 		11.1
(3) 		3.7
(-3) 		5.2
(-1.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3
(-3)
A 		5.5
(0)
A 		8
(3)
A 		7.8
(2.8)
A 		6.2
(0.8)
A 		4.1
(-1.7)
A 		5
B 11
(1.4)
A 		7.9
(-0.2)
A 		9.4
(0.6)
A 		2.5
(-3)
A 		14
(3)
A 		7.9
(-0.2)
A 		12
C 7.3
(-0.8)
A 		16.5
(3)
A 		1.8
(-3)
A 		8.9
(-0.1)
A 		3.5
(-2.3)
A 		9.5
(0.1)
A 		15
avr 7.1
(-1.8) 		10
(3) 		6.4
(-3) 		6.4
(-3) 		7.9
(-0.5) 		7.2
(-1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12291
Sequence Type Exemplar sequence
Representative Public ID Y57E12AL.4 NCBI
Target Description Y57E12AL.4 /REP_DB=WormBase Gene ID /WP=CE26192 /GB=AAK71408.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072388 NCBI Caenorhabditis elegans Y57E12AL.4 (Y57E12AL.4) mRNA, complete cds. 11/11 None
Y57E12AL.4 ENSEMBL cdna:known chromosome:CEL140:V:7057331:7058003:-1 gene:Y57E12AL.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7057331-7057931(-) 95.44 99.8
Public Domain and Genome References
Gene Title
Ensembl Y57E12AL.4
Entrez Gene 190356 Entrez gene
SwissProt Q95XV5 EMBL-EBI
WormBase CE26192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71408 Hypothetical protein Y57E12AL.4 [Caenorhabditis elegans] ref|NP_504789.1| Y57E12AL.4 [Caenorhabditis elegans] 2.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504789.1 1 121-143
Y57E12AL.4 1 121-143
Sequence
Target Sequence 
>C. ELEGANS:176880_AT
aactccagacaacatttcaattcaaaagtattgaaacagattcctcatttccttcgaaaa
acttgtccaattccttattgataatctgccgaacagctgccttatcaccttcactcaaac
ttgccaagaacttctggaattcaattttcagctcaccagcagttacatcgtctgggcgtt
cggtgactccttcagaaattaatccattctcaacatctttaggagagaaaatttggccat
cagtacttgccaatgccacgcagcagaaaataaaaagtagggaaaatttcaaaaacatga
gaaacaacttgcatttcttttgcaatcattccactttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCCAGACAACATTTCAATTCAA 307 141 59 Antisense
ATTGAAACAGATTCCTCATTTCCTT 616 5 88 Antisense
GAAAAACTTGTCCAATTCCTTATTG 520 355 114 Antisense
TGATAATCTGCCGAACAGCTGCCTT 400 565 137 Antisense
GGAATTCAATTTTCAGCTCACCAGC 501 533 194 Antisense
AGCTCACCAGCAGTTACATCGTCTG 349 79 208 Antisense
TTACATCGTCTGGGCGTTCGGTGAC 158 683 221 Antisense
CGTTCGGTGACTCCTTCAGAAATTA 646 245 235 Antisense
ATTAATCCATTCTCAACATCTTTAG 271 13 256 Antisense
CATCAGTACTTGCCAATGCCACGCA 203 213 296 Antisense
TTTCTTTTGCAATCATTCCACTTTT 511 671 372 Antisense
Sequence Source Affymetrix Proprietary Database