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[176879_at]

Description Y43B11AL.2 /REP_DB=WormBase Gene ID /WP=CE28264 /GB=AAK68485.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 2.4
(-3)
A 		26.2
(-2.3)
A 		5.2
(-2.9)
A 		211.3
(3)
P 		209
B 16.2
(-2.9)
A 		13.6
(-2.9)
A 		10.8
(-3)
A 		281.1
(3)
P 		270
C 4.5
(-2.9)
A 		7.5
(-2.9)
A 		1.5
(-3)
A 		248.2
(3)
P 		247
avr 7.7
(-3) 		15.8
(-2.8) 		5.8
(-3) 		246.9
(3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 4.8
(-2.7)
A 		3.2
(-3)
A 		10.5
(-1.5)
A 		7.9
(-2)
A 		3.1
(-3)
A 		32.7
(3)
A 		30
B 2.7
(-2.9)
A 		5.6
(-2.4)
A 		6.7
(-2.2)
A 		2.4
(-3)
A 		27.3
(1.5)
A 		35.7
(3)
M 		33
C 3
(-2.8)
A 		14.6
(0.1)
A 		2.1
(-3)
A 		2.5
(-2.9)
A 		5.7
(-2.1)
A 		26.5
(3)
A 		24
avr 3.5
(-3) 		7.8
(-2.1) 		6.4
(-2.4) 		4.3
(-2.8) 		12
(-1.2) 		31.6
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 0.9
(-3)
A 		5.7
(-2)
A 		1.4
(-2.9)
A 		30.9
(3)
P 		30
B 5.2
(-2.7)
A 		3.4
(-2.9)
A 		2.5
(-3)
A 		59.9
(3)
P 		57
C 1.5
(-2.9)
A 		2.2
(-2.8)
A 		0.5
(-3)
A 		41.9
(3)
P 		41
avr 2.5
(-2.9) 		3.8
(-2.7) 		1.5
(-3) 		44.2
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.2
(-2.7)
A 		2.3
(-1.8)
A 		2
(-2.1)
A 		0.9
(-3)
A 		7.9
(3)
A 		7
B 0.9
(-2.9)
A 		1.9
(-2.4)
A 		1.6
(-2.5)
A 		0.6
(-3)
A 		11.1
(2)
A 		13.3
(3)
M 		13
C 1.1
(-2.6)
A 		4.5
(-0.1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.9
(-2)
A 		8.9
(3)
A 		8
avr 1
(-3) 		2.5
(-2) 		1.5
(-2.7) 		1
(-3) 		4.6
(-0.6) 		10
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9458
Sequence Type Exemplar sequence
Representative Public ID Y43B11AL.2 NCBI
Target Description Y43B11AL.2 /REP_DB=WormBase Gene ID /WP=CE28264 /GB=AAK68485.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028293(11), NM_001028292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028293 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-50) (srx-50) mRNA, complete cds. 11/11 None
NM_001028292 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-50) (srx-50) mRNA, complete cds. 11/11 None
SNAP00000023666 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7057961:7059829:1 11/11 None
GENEFINDER00000023672 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7057961:7059829:1 11/11 None
Y43B11AL.2b ENSEMBL cdna:known chromosome:CEL140:IV:7057988:7059895:1 gene:Y43B11AL.2 11/11 None
Y43B11AL.2a.1 ENSEMBL cdna:known chromosome:CEL140:IV:7058247:7059829:1 gene:Y43B11AL.2 11/11 None
Y43B11AL.2a.2 ENSEMBL cdna:known chromosome:CEL140:IV:7058569:7059829:1 gene:Y43B11AL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7057966-7059835(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y43B11AL.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP86615 Serpentine receptor, class x protein 50, isoform b [Caenorhabditis elegans] ref|NP_001023464.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 1.0E-165
blast AAK68485 Serpentine receptor, class x protein 50, isoform a [Caenorhabditis elegans] ref|NP_001023463.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 1.0E-163
blast AAP86615 Serpentine receptor, class x protein 50, isoform b [Caenorhabditis elegans] ref|NP_001023464.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 1.0E-163
blast AAK68485 Serpentine receptor, class x protein 50, isoform a [Caenorhabditis elegans] ref|NP_001023463.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 1.0E-157
blast AAP86615 Serpentine receptor, class x protein 50, isoform b [Caenorhabditis elegans] ref|NP_001023464.1| Serpentine Receptor, class X family member (srx-50) [Caenorhabditis elegans] 1.0E-157
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023464.1 8 2-24,39-61,74-96,116-133,138-160,170-188,209-231,241-263
NP_001023463.1 5 28-50,104-123,133-151,204-226,236-258
Y43B11AL.2b 8 2-24,39-61,74-96,116-133,138-160,170-188,209-231,241-263
Y43B11AL.2a.1 5 28-50,104-123,133-151,204-226,236-258
Y43B11AL.2a.2 5 28-50,104-123,133-151,204-226,236-258
SNAP00000023666 8 7-29,49-71,78-100,125-142,147-169,179-197,218-240,250-272
GENEFINDER00000023672 8 13-35,55-77,84-103,130-147,152-174,184-202,223-245,255-277
Sequence
Target Sequence 
>C. ELEGANS:176879_AT
tgttttcatgggcgtgtgctgttcttccatcattctatttatacatctaccaggactgca
ggttttattacattgaagatttttgggtgttcacattctccacgacaccagtgtgcaaca
caattgtttggtatgctgacttcttgaagtataactcaattgttatttcaattgtaatta
ttgatgtgattactgtatcgaaagtgagaagctacaaagctggagtgaaaaataatttta
agctctcaaaaacaacgtcacaatctcatgaaaagaaacgaagtgctgagatgaatttct
tgaagcaagcatgtcttcaagcatttgtgtttgtctgtgagcttatcacatacttcctga
ttactccaagagttgatggaagtgaaagatggcttcgctttttcctatcaactgttgcat
gggtctgtgttcacatgctggatggtgtcatcactctaagctttaacaaagagttcactc
aaaccatattccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTCATGGGCGTGTGCTGTTCT 468 561 389 Antisense
TTTTGGGTGTTCACATTCTCCACGA 530 671 469 Antisense
TTCTCCACGACACCAGTGTGCAACA 5 695 484 Antisense
GTTTGGTATGCTGACTTCTTGAAGT 412 447 514 Antisense
GCATTTGTGTTTGTCTGTGAGCTTA 293 309 709 Antisense
CACATACTTCCTGATTACTCCAAGA 482 193 735 Antisense
GAAAGATGGCTTCGCTTTTTCCTAT 143 361 772 Antisense
CGCTTTTTCCTATCAACTGTTGCAT 391 255 784 Antisense
ACTGTTGCATGGGTCTGTGTTCACA 658 97 799 Antisense
TGGTGTCATCACTCTAAGCTTTAAC 702 551 831 Antisense
AGAGTTCACTCAAACCATATTCCGA 352 67 858 Antisense
Sequence Source Affymetrix Proprietary Database