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[176877_at] 7TM chemoreceptor, srt family

Description Y97E10B.10 /REP_DB=WormBase Gene ID /WP=CE26322 /GB=AAK71411.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 21      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 92
(3)
M 		70.8
(-0.5)
A 		55.8
(-3)
A 		72
(-0.3)
P 		36
B 46.7
(-0.7)
A 		31.1
(-2.5)
A 		27.1
(-3)
A 		79.3
(3)
P 		52
C 72.3
(0.7)
A 		47.5
(-1.6)
A 		33.3
(-3)
A 		96.4
(3)
A 		63
avr 70.3
(1.3) 		49.8
(-1.5) 		38.7
(-3) 		82.6
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 40.8
(-0.9)
A 		39.8
(-1.1)
A 		58.6
(2)
A 		64.4
(3)
A 		60.5
(2.4)
A 		28.3
(-3)
A 		36
B 42.8
(-1.5)
A 		57
(3)
A 		48.4
(0.3)
A 		41.4
(-1.9)
A 		53.7
(2)
A 		37.9
(-3)
A 		19
C 62.2
(1.3)
A 		29.4
(-2.2)
A 		54.4
(0.5)
A 		39.7
(-1.1)
A 		77.7
(3)
A 		22
(-3)
A 		56
avr 48.6
(0.3) 		42.1
(-0.8) 		53.8
(1.2) 		48.5
(0.3) 		64
(3) 		29.4
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 33.5
(3)
M 		15.4
(-1.7)
A 		14.6
(-1.9)
A 		10.5
(-3)
P 		23
B 14.9
(1.9)
A 		7.7
(-2.2)
A 		6.3
(-3)
A 		16.9
(3)
P 		11
C 23.9
(3)
A 		13.7
(-2)
A 		11.6
(-3)
A 		16.3
(-0.7)
A 		12
avr 24.1
(3) 		12.3
(-2.3) 		10.8
(-3) 		14.6
(-1.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.5
(-2.7)
A 		14.2
(0.8)
A 		12.8
(0.1)
A 		16.3
(1.9)
A 		18.3
(3)
A 		6.9
(-3)
A 		11
B 14.9
(-0.8)
A 		19
(1.4)
A 		11.8
(-2.6)
A 		11
(-3)
A 		21.8
(3)
A 		14.1
(-1.3)
A 		11
C 23
(2.3)
A 		9
(-2.5)
A 		13.8
(-0.8)
A 		8
(-2.8)
A 		25.1
(3)
A 		7.4
(-3)
A 		18
avr 15.1
(-0.2) 		14.1
(-0.7) 		12.8
(-1.4) 		11.8
(-1.9) 		21.7
(3) 		9.5
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12307
Sequence Type Exemplar sequence
Representative Public ID Y97E10B.10 NCBI
Target Description Y97E10B.10 /REP_DB=WormBase Gene ID /WP=CE26322 /GB=AAK71411.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072641(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072641 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-53) (srt-53) mRNA, complete cds. 9/11 None
GENEFINDER00000041709 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7940796:7945593:-1 10/11 None
Y97E10B.10 ENSEMBL cdna:known chromosome:CEL140:V:7941432:7942974:-1 gene:Y97E10B.10 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041701 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7941196-7943811(-) 97.34 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-53
Ensembl Y97E10B.10
Entrez Gene 190824 Entrez gene
SwissProt Q965R2 EMBL-EBI
WormBase CE38011 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71411 Serpentine receptor, class t protein 53 [Caenorhabditis elegans] ref|NP_505042.2| Serpentine Receptor, class T family member (srt-53) [Caenorhabditis elegans] 0.0
blast AAK71411 Serpentine receptor, class t protein 53 [Caenorhabditis elegans] ref|NP_505042.2| Serpentine Receptor, class T family member (srt-53) [Caenorhabditis elegans] 1.0E-178
blast CAE64029 Hypothetical protein CBG08624 [Caenorhabditis briggsae] 1.0E-155
blast CAE64029 Hypothetical protein CBG08624 [Caenorhabditis briggsae] 1.0E-148
blast NP_503506 Serpentine Receptor, class T family member (srt-41) [Caenorhabditis elegans] 4.0E-76
blast NP_503506 Serpentine Receptor, class T family member (srt-41) [Caenorhabditis elegans] 9.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.4E-112
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.6E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505042.2 7 34-56,68-90,105-127,148-170,195-217,237-259,269-291
Y97E10B.10 7 34-56,68-90,105-127,148-170,195-217,237-259,269-291
GENEFINDER00000041709 7 70-92,104-126,141-163,184-206,231-253,274-296,321-343
Sequence
Target Sequence 
>C. ELEGANS:176877_AT
gtttttcgatccacgcactatgaaaggacattaccaggaatacacaaatattccacacac
tattaataatttttcgctggttttcttgacgagcttcctctacatgtttttctgttttaa
agtgcggaggcaatttcgaaagagcttcagaccaaagagaactgccagacagcgtcagat
tttcttgcaagcttttcttttgtgcttgatacatttatctgcatcaattctctatgtagt
catgcaatttattgaagttccaaagttcttgacaattatttcacaatatctttggcagtt
ggctcaaggttgtcccgtcataatctatctcattttcaaccgaaaagtgcgcgctgcttt
gttggttttcgtgaacccttcttctcaggaaaataagtcatcaaatctcatccgaaaaag
tggcgatcggttgatccagttggtaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTCGATCCACGCACTATGAAA 596 447 639 Antisense
TTTTCGCTGGTTTTCTTGACGAGCT 544 677 709 Antisense
TGACGAGCTTCCTCTACATGTTTTT 662 569 725 Antisense
GACAGCGTCAGATTTTCTTGCAAGC 118 369 806 Antisense
GATACATTTATCTGCATCAATTCTC 601 423 846 Antisense
TTGGCAGTTGGCTCAAGGTTGTCCC 163 651 930 Antisense
AAGGTTGTCCCGTCATAATCTATCT 128 161 944 Antisense
TTCAACCGAAAAGTGCGCGCTGCTT 568 683 973 Antisense
CGCTGCTTTGTTGGTTTTCGTGAAC 708 253 990 Antisense
TCGTGAACCCTTCTTCTCAGGAAAA 109 605 1007 Antisense
GATCGGTTGATCCAGTTGGTACCAA 479 415 1063 Antisense
Sequence Source Affymetrix Proprietary Database