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[176876_at]

Description CC8.2 /REP_DB=WormBase Gene ID /WP=CE23615 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF39789.1
Cluster 6grp_high1_10_10 > 91      6grp_total > 93      4grp_total > 09      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 466
1 2 3 4 range
A 94.8
(-3)
A 		123.1
(-2.5)
P 		97.9
(-2.9)
A 		462.7
(3)
P 		368
B 61.9
(-3)
A 		133.6
(-2.1)
A 		150.3
(-1.9)
P 		528.1
(3)
P 		466
C 84
(-3)
A 		112.8
(-2.1)
A 		118.1
(-1.9)
P 		276
(3)
P 		192
avr 80.2
(-3) 		123.2
(-2.2) 		122.1
(-2.3) 		422.3
(3) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 126.5
(-3)
A 		237
(-1.1)
P 		223.5
(-1.3)
P 		313.8
(0.2)
P 		472.3
(3)
P 		251
(-0.8)
P 		346
B 148.7
(-3)
P 		200.1
(-2.3)
P 		316.1
(-0.9)
P 		408.5
(0.3)
P 		617.9
(3)
P 		165.2
(-2.8)
P 		469
C 251.5
(-1.8)
P 		213.5
(-2.1)
P 		257.8
(-1.7)
P 		319.8
(-1.1)
P 		763.4
(3)
P 		120.9
(-3)
P 		643
avr 175.6
(-3) 		216.9
(-2.4) 		265.8
(-1.8) 		347.4
(-0.7) 		617.9
(3) 		179
(-3) 		442
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 34.5
(-1.7)
A 		26.7
(-2.8)
P 		25.6
(-3)
A 		67.7
(3)
P 		42
B 19.7
(-3)
A 		33
(-2.1)
A 		34.8
(-2)
P 		112.5
(3)
P 		93
C 27.8
(-3)
A 		32.4
(-1.5)
A 		41.2
(1.3)
P 		46.5
(3)
P 		19
avr 27.3
(-3) 		30.7
(-2.6) 		33.9
(-2.2) 		75.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 23.3
(-3)
A 		84.3
(0.1)
P 		48.7
(-1.7)
P 		79.6
(-0.2)
P 		142.5
(3)
P 		61.1
(-1.1)
P 		119
B 51.7
(-3)
P 		66.6
(-2.6)
P 		76.8
(-2.2)
P 		108.2
(-1.3)
P 		251.1
(3)
P 		61.6
(-2.7)
P 		199
C 93.2
(-1.5)
P 		65.2
(-2.3)
P 		65.6
(-2.3)
P 		64.3
(-2.3)
P 		247
(3)
P 		40.5
(-3)
P 		207
avr 56.1
(-2.9) 		72
(-2.3) 		63.7
(-2.6) 		84
(-1.9) 		213.5
(3) 		54.4
(-3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10890
Sequence Type Exemplar sequence
Representative Public ID CC8.2 NCBI
Target Description CC8.2 /REP_DB=WormBase Gene ID /WP=CE23615 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF39789.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067991(11), NM_067990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067991 NCBI Caenorhabditis elegans CC8.2a (CC8.2) mRNA, complete cds. 11/11 None
NM_067990 NCBI Caenorhabditis elegans CC8.2b (CC8.2) mRNA, complete cds. 11/11 None
SNAP00000004439 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3645577:3647561:-1 11/11 None
GENEFINDER00000004441 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3645577:3648679:-1 11/11 None
CC8.2a.2 ENSEMBL cdna:known chromosome:CEL140:IV:3644927:3647656:-1 gene:CC8.2 11/11 None
CC8.2a.1 ENSEMBL cdna:known chromosome:CEL140:IV:3645163:3647656:-1 gene:CC8.2 11/11 None
CC8.2b ENSEMBL cdna:known chromosome:CEL140:IV:3645577:3648679:-1 gene:CC8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3645582-3647567(-) 100.0 100.0
Public Domain and Genome References
Ensembl CC8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68157 Hypothetical protein CC8.2b [Caenorhabditis elegans] ref|NP_500391.1| CC8.2b [Caenorhabditis elegans] 1.0E-158
blast AAF39789 Hypothetical protein CC8.2a [Caenorhabditis elegans] ref|NP_500392.1| CC8.2a [Caenorhabditis elegans] 1.0E-156
blast AAK68157 Hypothetical protein CC8.2b [Caenorhabditis elegans] ref|NP_500391.1| CC8.2b [Caenorhabditis elegans] 1.0E-154
blast AAF39789 Hypothetical protein CC8.2a [Caenorhabditis elegans] ref|NP_500392.1| CC8.2a [Caenorhabditis elegans] 1.0E-151
blast AAK68157 Hypothetical protein CC8.2b [Caenorhabditis elegans] ref|NP_500391.1| CC8.2b [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 5.3E-20
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 5.3E-20
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 5.3E-20
Sequence
Target Sequence 
>C. ELEGANS:176876_AT
acttcccgaaacagctcatcaatcaaccggccccccgtctcgtgctccacaacttcccct
accgttccgaacaggagtatcaagtgaagactcgggattcgagagtgtgtgtggcggctc
ttcgagcatccggcagcagcatcgtcggacaggtcaacttgttgaatgtcgcgtttgata
aggtggtagtggtacggtataccattgacggatgggcgactcaggacgagattgtcgcca
gttatagccatcggctgtttgacactgaggacattgatgcgttcaattttacaatcgcaa
ttccggtcaaactttcggaaggcaaatgcgaattctgtgtgcaataccaagtggccggcg
ccgaattctgggacaacaacggcggcgacaactacattgtgaacgtctccacgaaaggcc
caagctctccatttactcgctgctatggagcctcaaccggccttccagatgctccacgtg
gcagcactcgccgccagcaacaacgccgctggggccgtgcgctagaggagtctgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCCGAAACAGCTCATCAATCA 179 97 311 Antisense
GGATTCGAGAGTGTGTGTGGCGGCT 395 509 405 Antisense
GCAGCATCGTCGGACAGGTCAACTT 599 313 446 Antisense
TTGACGGATGGGCGACTCAGGACGA 266 699 515 Antisense
GATTGTCGCCAGTTATAGCCATCGG 508 431 540 Antisense
GCCATCGGCTGTTTGACACTGAGGA 479 281 557 Antisense
AATCGCAATTCCGGTCAAACTTTCG 680 167 603 Antisense
TCTGGGACAACAACGGCGGCGACAA 286 607 677 Antisense
TTGTGAACGTCTCCACGAAAGGCCC 364 709 707 Antisense
TTACTCGCTGCTATGGAGCCTCAAC 508 681 743 Antisense
GCCGTGCGCTAGAGGAGTCTGACGA 384 283 824 Antisense
Sequence Source Affymetrix Proprietary Database