[Home] | [Total List]

[176873_s_at]

Description ZK616.E /REP_DB=WormBase Gene ID /WP=CE26347 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60946.1
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 87      6grp_total > 78      4grp_total > 48      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 679
1 2 3 4 range
A 1141.8
(-3)
P 		1494.5
(2)
P 		1564.8
(3)
P 		1375.7
(0.3)
P 		423
B 1211.4
(-2.2)
P 		1626.9
(1.5)
P 		1801.3
(3)
P 		1122
(-3)
P 		679
C 1140.9
(-3)
P 		1441.3
(1.6)
P 		1530
(3)
P 		1295.1
(-0.6)
P 		389
avr 1164.7
(-3) 		1520.9
(1.6) 		1632
(3) 		1264.3
(-1.7) 		467

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 674
1 2 3 4 5 6 range
A 1066.1
(-2)
P 		1073.4
(-2)
P 		1040.8
(-2.4)
P 		990.8
(-3)
P 		1118.5
(-1.4)
P 		1464.3
(3)
P 		474
B 1036.1
(-1.2)
P 		1065.4
(-0.9)
P 		832
(-3)
P 		1089.2
(-0.7)
P 		1097.2
(-0.6)
P 		1506.4
(3)
P 		674
C 1029.5
(-3)
P 		1045.4
(-2.8)
P 		1058.7
(-2.6)
P 		1065.4
(-2.5)
P 		1162.2
(-1.3)
P 		1504.4
(3)
P 		475
avr 1043.9
(-2.2) 		1061.4
(-2) 		977.2
(-3) 		1048.5
(-2.2) 		1126
(-1.3) 		1491.7
(3) 		515
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 415.7
(3)
P 		324.4
(0.4)
P 		409.1
(2.8)
P 		201.4
(-3)
P 		214
B 386.3
(2)
P 		401.8
(2.5)
P 		417.4
(3)
P 		239.1
(-3)
P 		178
C 377.7
(0)
P 		414.4
(0.7)
P 		533.3
(3)
P 		218.4
(-3)
P 		315
avr 393.2
(1.5) 		380.2
(1.1) 		453.3
(3) 		219.6
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 196.5
(-3)
P 		381.8
(3)
P 		226.7
(-2)
P 		251.3
(-1.2)
P 		337.5
(1.6)
P 		356.5
(2.2)
P 		185
B 360.5
(-0.4)
P 		354.6
(-0.5)
P 		202
(-3)
P 		288.5
(-1.6)
P 		445.8
(1.1)
P 		561.7
(3)
P 		360
C 381.6
(0.5)
P 		319
(-0.8)
P 		269.5
(-1.9)
P 		214.3
(-3)
P 		376.1
(0.4)
P 		503.6
(3)
P 		289
avr 312.9
(-1) 		351.8
(-0) 		232.7
(-3) 		251.4
(-2.5) 		386.5
(0.8) 		473.9
(3) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176873_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19223
Sequence Type Exemplar sequence
Representative Public ID ZK616.E NCBI
Target Description ZK616.E /REP_DB=WormBase Gene ID /WP=CE26347 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60946.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068401 NCBI Caenorhabditis elegans ZK616.6 (ZK616.6) mRNA, complete cds. 11/11 None
SNAP00000016313 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5394015:5394793:-1 11/11 None
GENEFINDER00000016327 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5394015:5394793:-1 11/11 None
ZK616.6 ENSEMBL cdna:known chromosome:CEL140:IV:5393848:5394793:-1 gene:ZK616.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5394020-5394799(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK616.6
Entrez Gene 177324 Entrez gene
SwissProt Q9N4N3 EMBL-EBI
WormBase CE26347 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250401_AT expressed protein at
CANINE:1585081_AT similar to CG11137-PA cfa
CANINE_2:CFA.11084.1.A1_AT similar to CG11137-PA cfa
CANINE_2:CFAAFFX.12761.1.S1_S_AT similar to CG11137-PA cfa
DROSOPHILA_2:1631775_AT dm
DROSGENOME1:142724_AT dm
HG-U133B:223043_AT hypothetical protein LOC51234 hs
HG-U133_PLUS_2:223043_AT hypothetical protein LOC51234 hs
HG-U133_PLUS_2:223857_X_AT hypothetical protein LOC51234 hs
HG-U133B:223857_X_AT hypothetical protein LOC51234 hs
HU35KSUBA:AA251497_AT hypothetical protein LOC51234 hs
U133_X3P:G12803512_3P_A_AT hypothetical protein LOC51234 hs
HG-U95C:49175_AT hypothetical protein LOC51234 hs
HG-U95E:80562_S_AT hypothetical protein LOC51234 hs
HU35KSUBA:C01552_AT Hypothetical protein LOC51234 hs
U133_X3P:HS.250905.2.A1_3P_AT Hypothetical protein LOC51234 hs
HG-U133_PLUS_2:226741_AT Hypothetical protein LOC51234 hs
HG-U133B:226741_AT Hypothetical protein LOC51234 hs
MOE430A:1438369_X_AT RIKEN cDNA 2610318K02 gene mm
MOUSE430A_2:1438369_X_AT RIKEN cDNA 2610318K02 gene mm
MOUSE430_2:1438369_X_AT RIKEN cDNA 2610318K02 gene mm
MU11KSUBA:AA272481_AT RIKEN cDNA 2610318K02 gene mm
MOE430A:1418124_AT RIKEN cDNA 2610318K02 gene mm
MOUSE430A_2:1418124_AT RIKEN cDNA 2610318K02 gene mm
MOUSE430_2:1418124_AT RIKEN cDNA 2610318K02 gene mm
MOE430B:1458916_AT RIKEN cDNA 2610318K02 gene (2610318K02Rik), mRNA mm
MOUSE430_2:1458916_AT RIKEN cDNA 2610318K02 gene (2610318K02Rik), mRNA mm
MG-U74CV2:129646_AT RIKEN cDNA 2610318K02 gene (2610318K02Rik), mRNA mm
MG-U74CV2:133464_AT RIKEN cDNA 2610318K02 gene (2610318K02Rik), mRNA mm
MU19KSUBC:TC40766_AT RIKEN cDNA 2610318K02 gene (2610318K02Rik), mRNA mm
RG-U34B:RC_AI060196_AT similar to RIKEN cDNA 2610318K02 (predicted) rn
RAE230A:1399013_AT similar to RIKEN cDNA 2610318K02 (predicted) rn
RAT230_2:1399013_AT similar to RIKEN cDNA 2610318K02 (predicted) rn
RAE230B:1382286_AT Similar to RIKEN cDNA 2610318K02 (predicted) rn
RAT230_2:1382286_AT Similar to RIKEN cDNA 2610318K02 (predicted) rn
RG-U34C:RC_AI172278_AT Similar to RIKEN cDNA 2610318K02 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60946 Hypothetical protein ZK616.6 [Caenorhabditis elegans] ref|NP_500802.1| ZK616.6 [Caenorhabditis elegans] 3.0E-98
blast CAE72715 Hypothetical protein CBG19952 [Caenorhabditis briggsae] 2.0E-92
blast XP_395810 PREDICTED: similar to CG11137-PA [Apis mellifera] 9.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR009445 EMBL-EBI Protein of unknown function DUF1077 7.7E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500802.1 2 73-95,124-146
ZK616.6 2 73-95,124-146
SNAP00000016313 2 73-95,124-146
GENEFINDER00000016327 2 73-95,124-146
Sequence
Target Sequence 
>C. ELEGANS:176873_S_AT
aaacttgactacacttactcttcgaagaattgtcgtactgcggacagtaattttaacccg
ccaggcttctactcgacagctgccaccgttcaacatagcgccgaagccgatcgatccgct
gatcaacacgagcatctggcacgaaaacgagtatgggacactgcaatgggaccagctaaa
tctctgccgatgaacatgttcatgatgtatatggccggaggcggtgtgtcgattttccca
attatgatggtcggaatgatggtgtttaggccgctgaaagcattattcgcagtcaattcc
acattcaaaccgcttgagagccctgcaactggatcaatgtttattcacaagctcatcttc
tgccttggaaacctcggagcaatcggtcttgccatctataaagtacatacaatgggtctt
ctaccgaatactccatcagattggctcgaattcattcctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTGACTACACTTACTCTTCGA 472 127 31 Antisense
GATCCGCTGATCAACACGAGCATCT 251 417 143 Antisense
TGGGACCAGCTAAATCTCTGCCGAT 253 555 197 Antisense
GATGGTGTTTAGGCCGCTGAAAGCA 13 409 288 Antisense
GCATTATTCGCAGTCAATTCCACAT 593 307 310 Antisense
CATTCAAACCGCTTGAGAGCCCTGC 360 211 332 Antisense
GAGCCCTGCAACTGGATCAATGTTT 58 387 348 Antisense
TTATTCACAAGCTCATCTTCTGCCT 258 679 371 Antisense
AAACCTCGGAGCAATCGGTCTTGCC 96 127 399 Antisense
AATGGGTCTTCTACCGAATACTCCA 304 163 441 Antisense
GATTGGCTCGAATTCATTCCTCAAC 677 435 469 Antisense
Sequence Source Affymetrix Proprietary Database