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[176872_at]

Description F59D8.E /REP_DB=WormBase Gene ID /WP=CE20904 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35968.1
Cluster 6grp_total > 29      4grp_total > 26      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 6.2
(-3)
A 		18.6
(-2)
A 		22.7
(-1.6)
A 		77.8
(3)
A 		72
B 3.1
(-2.9)
A 		33.8
(3)
A 		6.4
(-2.3)
A 		2.7
(-3)
A 		31
C 5.8
(-2.8)
A 		15.2
(2.3)
A 		5.4
(-3)
A 		16.4
(3)
A 		11
avr 5
(-3) 		22.5
(0.8) 		11.5
(-1.6) 		32.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 61.1
(3)
A 		9.9
(-3)
A 		18.1
(-2)
A 		11.4
(-2.8)
A 		39.5
(0.5)
A 		20.6
(-1.7)
A 		51
B 15.6
(-0.1)
A 		8.4
(-1.7)
A 		8.8
(-1.6)
A 		9.3
(-1.5)
A 		29.5
(3)
A 		2.6
(-3)
A 		27
C 23.7
(3)
A 		22.4
(2.4)
A 		18.4
(0.6)
A 		13.8
(-1.5)
A 		19.8
(1.2)
A 		10.5
(-3)
A 		13
avr 33.5
(3) 		13.6
(-2.4) 		15.1
(-2) 		11.5
(-2.9) 		29.6
(2) 		11.2
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.2
(-3)
A 		4
(-1.8)
A 		5.9
(-0.6)
A 		11.4
(3)
A 		9
B 1
(-2.7)
A 		8.4
(3)
A 		1.5
(-2.3)
A 		0.6
(-3)
A 		8
C 1.9
(-3)
A 		4.4
(3)
A 		1.9
(-3)
A 		2.8
(-0.8)
A 		3
avr 1.7
(-3) 		5.6
(3) 		3.1
(-0.8) 		4.9
(1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 11.3
(2.6)
A 		3.5
(-2.6)
A 		3.9
(-2.3)
A 		2.9
(-3)
A 		11.9
(3)
A 		5
(-1.6)
A 		9
B 5.4
(-0.6)
A 		2.8
(-2)
A 		2.1
(-2.4)
A 		2.5
(-2.2)
A 		12
(3)
A 		1
(-3)
A 		11
C 8.8
(3)
A 		6.8
(1)
A 		4.7
(-1.1)
A 		2.8
(-3)
A 		6.4
(0.6)
A 		3.5
(-2.3)
A 		6
avr 8.5
(1.7) 		4.4
(-1.6) 		3.6
(-2.3) 		2.7
(-3) 		10.1
(3) 		3.2
(-2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19601
Sequence Type Exemplar sequence
Representative Public ID F59D8.E NCBI
Target Description F59D8.E /REP_DB=WormBase Gene ID /WP=CE20904 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35968.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F59D8.E
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F59D8.E F59D8.E /REP_DB=WormBase Gene ID /WP=CE20904 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35968.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076211 11/11 Negative Strand Matching Probes A 
NM_076212 11/11 Negative Strand Matching Probes A 
SNAP00000016179 11/11 Negative Strand Matching Probes None
GENEFINDER00000016190 11/11 Negative Strand Matching Probes None
SNAP00000036909 11/11 Negative Strand Matching Probes None
GENEFINDER00000036913 11/11 Negative Strand Matching Probes None
F59D8.2 11/11 Negative Strand Matching Probes A 
F59D8.1.2 11/11 Negative Strand Matching Probes A 
F59D8.1.1 11/11 Negative Strand Matching Probes A 
F59D8.1.3 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3567439-3570345(+) 100.0 100.0
chrX:3558878-3561781(+) 99.25 99.25
chrX:3405646-3408542(-) 97.86 97.86
Sequence
Target Sequence 
>C. ELEGANS:176872_AT
gaacatttccttgggcattgattctgagtccaaaggtctcatattgacgatcaatctctt
cagtagacatttggtattaaatggtgagtggcattccaatggtggttggaattctgcgtt
cagcctcgtagaagaagagagcacggtgaagctcgaacttggagtcgttggtcaagaaag
tgaggagggatttgatgtcaaactccccgtttctgacatacttctcaacaacattgtcaa
tagtttccatgtcaattggaagaacgatgtagtccatctccttgtagcgaaggtagaaaa
cagcgtgagcattttgagaatcggtttgttggacacgtggacggatgttcatcttcttga
caatctcttgaagcatctggattccagattggacacgacgggaacggagttcatcagatt
gctttccgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATTTCCTTGGGCATTGATTCT 516 351 1203 Antisense
GACGATCAATCTCTTCAGTAGACAT 330 379 1248 Antisense
TGGTTGGAATTCTGCGTTCAGCCTC 409 551 1305 Antisense
AGCTCGAACTTGGAGTCGTTGGTCA 182 81 1352 Antisense
TGTCAAACTCCCCGTTTCTGACATA 667 555 1398 Antisense
GTTTCTGACATACTTCTCAACAACA 292 451 1411 Antisense
GAACGATGTAGTCCATCTCCTTGTA 358 347 1464 Antisense
GAATCGGTTTGTTGGACACGTGGAC 435 329 1520 Antisense
GACACGTGGACGGATGTTCATCTTC 257 367 1534 Antisense
ATCTCTTGAAGCATCTGGATTCCAG 128 33 1565 Antisense
GAGTTCATCAGATTGCTTTCCGTAA 16 399 1609 Antisense
Sequence Source Affymetrix Proprietary Database