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[176870_at]

Description ZK616.C /REP_DB=WormBase Gene ID /WP=CE26345 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60944.1
Cluster 6grp_total > 20      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 35.1
(3)
A 		35
(2.9)
A 		30.4
(-3)
A 		30.7
(-2.6)
A 		5
B 45.8
(1.4)
A 		7.2
(-3)
A 		41.1
(0.8)
A 		60.3
(3)
A 		53
C 10.2
(-3)
A 		11.1
(-2.9)
A 		53.7
(0.8)
A 		78.2
(3)
A 		68
avr 30.4
(-1) 		17.8
(-3) 		41.7
(0.7) 		56.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 19.4
(-0.9)
A 		47.1
(3)
A 		4.7
(-3)
A 		5
(-2.9)
A 		6
(-2.8)
A 		4.4
(-3)
A 		43
B 5.9
(-2.7)
A 		19.5
(-0)
A 		8.6
(-2.2)
A 		34.9
(3)
A 		8.6
(-2.2)
A 		4.3
(-3)
A 		31
C 10.6
(-2.8)
A 		20.2
(-1.9)
A 		73.8
(3)
A 		8.2
(-3)
A 		14.8
(-2.4)
A 		21.8
(-1.8)
A 		66
avr 12
(-2.3) 		28.9
(3) 		29
(3) 		16
(-1.1) 		9.8
(-3) 		10.2
(-2.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.8
(3)
A 		7.6
(-0.8)
A 		7.9
(-0.5)
A 		4.5
(-3)
A 		8
B 14.6
(3)
A 		1.8
(-3)
A 		9.5
(0.6)
A 		12.8
(2.2)
A 		13
C 3.4
(-2.9)
A 		3.2
(-3)
A 		18.7
(3)
A 		13.2
(0.9)
A 		16
avr 10.3
(1.7) 		4.2
(-3) 		12
(3) 		10.2
(1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.6
(-2)
A 		16.7
(3)
A 		1
(-3)
A 		1.3
(-2.9)
A 		1.8
(-2.7)
A 		1.1
(-3)
A 		16
B 2
(-2.7)
A 		6.5
(0.9)
A 		2.1
(-2.6)
A 		9.2
(3)
A 		3.5
(-1.5)
A 		1.6
(-3)
A 		8
C 3.9
(-2.2)
A 		6.2
(-1.4)
A 		18.8
(3)
A 		1.7
(-3)
A 		4.8
(-1.9)
A 		7.3
(-1)
A 		17
avr 3.2
(-3) 		9.8
(3) 		7.3
(0.7) 		4.1
(-2.2) 		3.4
(-2.8) 		3.3
(-2.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176870_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19196
Sequence Type Exemplar sequence
Representative Public ID ZK616.C NCBI
Target Description ZK616.C /REP_DB=WormBase Gene ID /WP=CE26345 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60944.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068406 NCBI Caenorhabditis elegans ZK616.8 (ZK616.8) mRNA, complete cds. 11/11 None
SNAP00000016319 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5408414:5410280:-1 10/11 None
ZK616.8 ENSEMBL cdna:known chromosome:CEL140:IV:5409559:5412137:-1 gene:ZK616.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016323 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5409564-5412143(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK616.8
Entrez Gene 191362 Entrez gene
SwissProt Q9N4M8 EMBL-EBI
WormBase CE26345 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60944 Hypothetical protein ZK616.8 [Caenorhabditis elegans] ref|NP_500807.1| ZK616.8 [Caenorhabditis elegans] 0.0
blast AAB88365 Hypothetical protein M04G7.2 [Caenorhabditis elegans] ref|NP_499934.1| M04G7.2 [Caenorhabditis elegans] 0.0
blast AAF60945 Hypothetical protein ZK616.7 [Caenorhabditis elegans] ref|NP_500806.1| ZK616.7 [Caenorhabditis elegans] 1.0E-169
blast CAE67290 Hypothetical protein CBG12739 [Caenorhabditis briggsae] 1.0E-152
blast AAB88365 Hypothetical protein M04G7.2 [Caenorhabditis elegans] ref|NP_499934.1| M04G7.2 [Caenorhabditis elegans] 5.0E-68
blast CAE63491 Hypothetical protein CBG07960 [Caenorhabditis briggsae] 6.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-100
Sequence
Target Sequence 
>C. ELEGANS:176870_AT
aaaaaccaaattctcaccaaatcagaagcgacgcgaggtaaagaagagcgattcggacac
tgaaagctcacacaaaaatactagacgagggaaaccggtaccagcgccgccgtcatcgaa
cagcaagggctcaaacgacaaaaataaacgaaaatccgtccaagaagttgtgaaaaaggt
tgtcaaccacatcccgttctctccatcaaaacagcccacgtctactccaccggtttcaga
gggaaataggaaaaggcttcagacgaaggttgttgagagaagcaaccaaatcgagagtga
aatggactcgtttgtcaagaaaatcgaaccgaatgaacgccgagccactcaatacaatca
ctccaactcacttagcggaagcaatgaagcagttccgcctggaaatgtgaagaggtcgcc
acaaaaagctacgcatcccatcagaactaccagatccttaattggactcgatggagagac
agaagctgtgtactcgaagacatccaaaacatctccagacaagggaaaagtgacggcgga
ttcgcgcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAACCAAATTCTCACCAAATCAG 189 119 498 Antisense
TAGACGAGGGAAACCGGTACCAGCG 114 639 579 Antisense
ACAGCAAGGGCTCAAACGACAAAAA 547 107 617 Antisense
TCTACTCCACCGGTTTCAGAGGGAA 239 615 718 Antisense
CAATCACTCCAACTCACTTAGCGGA 97 181 852 Antisense
GAAGCAGTTCCGCCTGGAAATGTGA 692 339 883 Antisense
GAGGTCGCCACAAAAAGCTACGCAT 474 401 909 Antisense
ACAAAAAGCTACGCATCCCATCAGA 510 109 918 Antisense
GCTGTGTACTCGAAGACATCCAAAA 522 293 982 Antisense
GACATCCAAAACATCTCCAGACAAG 156 369 996 Antisense
AAAAGTGACGGCGGATTCGCGCGCT 61 133 1023 Antisense
Sequence Source Affymetrix Proprietary Database