[Home] | [Total List]

[176866_s_at]

Description ZK616.G /REP_DB=WormBase Gene ID /WP=CE26349 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60947.1
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 68      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 75      6grp_total > 79      4grp_total > 43      6grp_highest_sub > Da      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 495
1 2 3 4 range
A 763.9
(-1.3)
P 		1012.1
(3)
P 		677.8
(-2.9)
P 		669.7
(-3)
P 		342
B 760
(-1.4)
P 		1056.9
(3)
P 		921.8
(1)
P 		648.2
(-3)
P 		409
C 848.8
(-0.9)
P 		1143.6
(3)
P 		812.5
(-1.4)
P 		695.8
(-3)
P 		448
avr 790.9
(-1.2) 		1070.9
(3) 		804
(-1) 		671.2
(-3) 		400

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 884.9
(-0.9)
P 		1099.1
(3)
P 		892.3
(-0.8)
P 		771.1
(-3)
P 		832.2
(-1.9)
P 		848.1
(-1.6)
P 		328
B 840
(0.3)
P 		678.5
(-3)
P 		828.9
(0)
P 		837.4
(0.2)
P 		975.2
(3)
P 		945.3
(2.4)
P 		297
C 720.6
(-2.6)
P 		781.6
(-1.3)
P 		727.2
(-2.5)
P 		769.4
(-1.5)
P 		704.3
(-3)
P 		970
(3)
P 		266
avr 815.2
(-1.9) 		853.1
(-0.2) 		816.1
(-1.9) 		792.6
(-3) 		837.2
(-0.9) 		921.1
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 278.1
(3)
P 		219.7
(1.1)
P 		177.2
(-0.4)
P 		98
(-3)
P 		180
B 242.4
(2.1)
P 		261
(3)
P 		213.6
(0.7)
P 		138.1
(-3)
P 		123
C 281
(1.6)
P 		328.8
(3)
P 		283.2
(1.7)
P 		117.3
(-3)
P 		212
avr 267.2
(2.9) 		269.8
(3) 		224.7
(1.2) 		117.8
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 163.1
(-3)
P 		390.9
(3)
P 		194.3
(-2.2)
P 		195.6
(-2.1)
P 		251.1
(-0.7)
P 		206.5
(-1.9)
P 		228
B 292.3
(-0.2)
P 		225.9
(-2.2)
P 		201.3
(-3)
P 		221.8
(-2.4)
P 		396.2
(3)
P 		352.5
(1.7)
P 		195
C 267.1
(1)
P 		238.5
(-0)
P 		185.1
(-1.9)
P 		154.7
(-3)
P 		227.9
(-0.4)
P 		324.7
(3)
P 		170
avr 240.8
(-0.1) 		285.1
(2.5) 		193.6
(-2.8) 		190.7
(-3) 		291.7
(2.8) 		294.6
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176866_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19118
Sequence Type Exemplar sequence
Representative Public ID ZK616.G NCBI
Target Description ZK616.G /REP_DB=WormBase Gene ID /WP=CE26349 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60947.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068400 NCBI Caenorhabditis elegans ZK616.4 (ZK616.4) mRNA, complete cds. 11/11 None
SNAP00000016314 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5395030:5396707:1 11/11 None
GENEFINDER00000016330 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5395030:5396707:1 11/11 None
ZK616.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:5394951:5396955:1 gene:ZK616.4 11/11 None
ZK616.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:5395022:5396955:1 gene:ZK616.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5393148-5396713(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK616.4
Entrez Gene 177325 Entrez gene
SwissProt Q9N4N4 EMBL-EBI
WormBase CE31753 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22091.1.S1_AT similar to actin-like 6B cfa
DROSOPHILA_2:1623387_AT Brahma associated protein 55kD dm
DROSGENOME1:154486_AT Brahma associated protein 55kD dm
HG-U95AV2:33450_AT actin-like 6B hs
HG-U133_PLUS_2:206014_AT actin-like 6B hs
HG-U133A:206014_AT actin-like 6B hs
HG-U133A_2:206014_AT actin-like 6B hs
HG-U133_PLUS_2:206013_S_AT actin-like 6B hs
HG-U133A:206013_S_AT actin-like 6B hs
HG-FOCUS:206013_S_AT actin-like 6B hs
HG-U133A_2:206013_S_AT actin-like 6B hs
HU35KSUBA:RC_AA223970_AT actin-like 6B hs
U133_X3P:G11761635_3P_X_AT actin-like 6B hs
U133_X3P:G11761635_3P_A_AT actin-like 6B hs
HG-U95AV2:31309_R_AT Actin-like 6B hs
U133_X3P:HS.121485.0.S1_3P_AT Actin-like 6B hs
HG-U133A_2:216982_X_AT Actin-like 6B hs
HG-U133_PLUS_2:216982_X_AT Actin-like 6B hs
HG-U133A:216982_X_AT Actin-like 6B hs
HG-U133A_2:216978_X_AT Actin-like 6B hs
HG-U133_PLUS_2:216978_X_AT Actin-like 6B hs
HG-U133A:216978_X_AT Actin-like 6B hs
MOE430A:1422564_AT actin-like 6B mm
MOUSE430A_2:1422564_AT actin-like 6B mm
MOUSE430_2:1422564_AT actin-like 6B mm
MU11KSUBB:MSA.18645.0_S_AT actin-like 6B mm
MG-U74AV2:104654_AT actin-like 6B mm
MU19KSUBB:TC26758_AT Actin-related protein mArpNalpha mm
RAE230B:1382608_AT actin-like 6 (predicted) rn
RAT230_2:1382608_AT actin-like 6 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5884 actin filament inferred from electronic annotation QuickGO AmiGO
15629 actin cytoskeleton inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
5200 structural constituent of cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60947 Hypothetical protein ZK616.4 [Caenorhabditis elegans] ref|NP_500801.2| ZK616.4 [Caenorhabditis elegans] 0.0
blast CAE72714 Hypothetical protein CBG19951 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004000 EMBL-EBI Actin/actin-like 5.4E-36
Pfam IPR004000 EMBL-EBI Actin/actin-like 5.7E-40
Pfam IPR004000 EMBL-EBI Actin/actin-like 5.4E-36
Pfam IPR004000 EMBL-EBI Actin/actin-like 5.7E-40
Sequence
Target Sequence 
>C. ELEGANS:176866_S_AT
ggatatggcagccactatgctccaactctgtgatacaagtattgatatggactacgtcga
caaacttccatcgacaccttatgctttccctaatggatacacaaaagagttcggagccga
aagaatcaagcttccagagtgtttattcgatcttggataccttaaagctgagggaaagaa
ggatggattgatgacagtggctcaaatggcagcagcttctgcaaatcttgcagatattga
catcagaccgacactcttctcgaacgtcacagtcactggaggaaactcgttgattcttgg
attcacagaacggctcaactatgctctagccacaaagtgtccaccgacgatcaagctccg
agtattcgctgctccaactcaagcggaacggaagtacggcgcatggatcggaggatcaat
tctcggatctttgggaacattccaacaaatgtgggtgagcaaggccgagtacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATGGCAGCCACTATGCTCCAA 573 509 861 Antisense
CTATGCTCCAACTCTGTGATACAAG 271 225 875 Antisense
GGACTACGTCGACAAACTTCCATCG 508 517 909 Antisense
GTGGCTCAAATGGCAGCAGCTTCTG 61 493 1057 Antisense
TATTGACATCAGACCGACACTCTTC 643 665 1095 Antisense
CAGAACGGCTCAACTATGCTCTAGC 228 205 1166 Antisense
ATGCTCTAGCCACAAAGTGTCCACC 411 43 1181 Antisense
GATCAAGCTCCGAGTATTCGCTGCT 677 421 1209 Antisense
TTCGCTGCTCCAACTCAAGCGGAAC 189 697 1225 Antisense
AGTACGGCGCATGGATCGGAGGATC 123 61 1253 Antisense
GTGGGTGAGCAAGGCCGAGTACGAC 340 487 1311 Antisense
Sequence Source Affymetrix Proprietary Database