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[176865_at]

Description F59D8.F /REP_DB=WormBase Gene ID /WP=CE20905 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35969.1
Cluster 6grp_total > 08      4grp_total > 07      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 38.7
(1.4)
A 		10.3
(-3)
A 		48.9
(3)
A 		30.3
(0.1)
A 		39
B 3.6
(-3)
A 		9
(3)
A 		6.8
(0.6)
A 		5.1
(-1.3)
A 		5
C 14.4
(2.1)
A 		6.3
(-3)
A 		6.8
(-2.7)
A 		15.9
(3)
A 		10
avr 18.9
(2.1) 		8.5
(-3) 		20.8
(3) 		17.1
(1.2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 41.4
(2.4)
A 		8.6
(-2.5)
A 		36
(1.6)
A 		45.2
(3)
A 		24.2
(-0.2)
A 		5.5
(-3)
A 		40
B 55.1
(3)
A 		9.4
(-2.5)
A 		4.9
(-3)
A 		11
(-2.3)
A 		18.4
(-1.4)
A 		36.7
(0.8)
A 		50
C 16.8
(-0.8)
A 		36.7
(3)
A 		10.7
(-1.9)
A 		4.9
(-3)
A 		7.7
(-2.5)
A 		5.9
(-2.8)
A 		32
avr 37.8
(3) 		18.2
(-2.4) 		17.2
(-2.7) 		20.4
(-1.8) 		16.8
(-2.8) 		16
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.1
(3)
A 		2.2
(-3)
A 		12.8
(2.3)
A 		4.4
(-1.9)
A 		12
B 1.2
(-2.5)
A 		2.2
(3)
A 		1.6
(-0.3)
A 		1.1
(-3)
A 		1
C 4.8
(3)
A 		1.8
(-3)
A 		2.4
(-1.8)
A 		2.7
(-1.2)
A 		3
avr 6.7
(3) 		2.1
(-3) 		5.6
(1.6) 		2.7
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.6
(0.7)
A 		3.1
(-1.9)
A 		7.8
(0.8)
A 		11.5
(3)
A 		7.3
(0.5)
A 		1.3
(-3)
A 		10
B 19.2
(3)
A 		3.1
(-2.4)
A 		1.2
(-3)
A 		2.9
(-2.4)
A 		7.5
(-0.9)
A 		13.7
(1.2)
A 		18
C 6.2
(0.1)
A 		11.2
(3)
A 		2.7
(-2)
A 		1
(-3)
A 		2.5
(-2.1)
A 		2
(-2.4)
A 		10
avr 11
(3) 		5.8
(-1.4) 		3.9
(-3) 		5.1
(-2) 		5.8
(-1.4) 		5.7
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19611
Sequence Type Exemplar sequence
Representative Public ID F59D8.F NCBI
Target Description F59D8.F /REP_DB=WormBase Gene ID /WP=CE20905 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF35969.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036910 ENSEMBL cdna:SNAP chromosome:CEL140:X:3562725:3564596:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076211 10/11 Negative Strand Matching Probes A 
NM_076212 11/11 Negative Strand Matching Probes A 
SNAP00000016179 11/11 Negative Strand Matching Probes None
GENEFINDER00000016190 11/11 Negative Strand Matching Probes None
SNAP00000036909 10/11 Negative Strand Matching Probes None
GENEFINDER00000036913 10/11 Negative Strand Matching Probes None
F59D8.2 10/11 Negative Strand Matching Probes A 
F59D8.1.2 11/11 Negative Strand Matching Probes A 
F59D8.1.1 11/11 Negative Strand Matching Probes A 
F59D8.1.3 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3571655-3572522(+) 100.0 100.0
chrX:3562720-3563947(+) 98.39 98.39
chrX:3403474-3404337(-) 96.31 96.31
Sequence
Target Sequence 
>C. ELEGANS:176865_AT
tttggtgtagatggtcttctctccctcttgaacaatggtgtaagcgacttcgcagtctcc
ttccatggtcttttcatgaacattgaagaaaagagaatctttgtcggattccatatcttt
ctgatcttggctcatctcatcaactggagcagacttgcggagagagaaaagattgagaat
cgatctcttggcgttcttggaccactcggcatcttcggaagaaaattggatctcagaaac
aagtccatttctgatttgagcacggaatggaagctcaagaagctctttgagctcatcgga
aagctcacgttgctccaaagatttgatttttggccattgctcagattgtggaatgtggga
agcagagtactgaatatcaatcaattgaagatgaatgtaacgatcatcaacagcttgaag
acgggtacggcaagaaatcagggtttgggaagcatcggaaaatgtagttgggagtccaga
gagaagaagtccgtcaaatttgtagacgtattcgctctttggggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGTGTAGATGGTCTTCTCTCCC 212 667 289 Antisense
TGTAAGCGACTTCGCAGTCTCCTTC 344 559 327 Antisense
TCTCCTTCCATGGTCTTTTCATGAA 246 611 344 Antisense
ATCTTTGTCGGATTCCATATCTTTC 573 31 385 Antisense
TCTGATCTTGGCTCATCTCATCAAC 700 607 408 Antisense
GAGAATCGATCTCTTGGCGTTCTTG 277 391 463 Antisense
ACCACTCGGCATCTTCGGAAGAAAA 367 83 489 Antisense
AAGTCCATTTCTGATTTGAGCACGG 496 157 529 Antisense
ATCGGAAAGCTCACGTTGCTCCAAA 413 35 583 Antisense
GATTTTTGGCCATTGCTCAGATTGT 268 429 613 Antisense
GTAGACGTATTCGCTCTTTGGGGAG 107 457 790 Antisense
Sequence Source Affymetrix Proprietary Database