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[176863_at]

Description ZK616.D /REP_DB=WormBase Gene ID /WP=CE26346 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60945.1
Cluster 6grp_total > 88      4grp_total > 41      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.4
(-3)
A 		7.8
(-1.9)
A 		14.1
(0)
A 		23.7
(3)
A 		19
B 19
(3)
A 		7.4
(-3)
A 		18.4
(2.7)
A 		8.9
(-2.2)
A 		12
C 4.4
(-2.9)
A 		26.2
(3)
A 		7.9
(-2)
A 		4.1
(-3)
A 		22
avr 9.3
(-3) 		13.8
(3) 		13.5
(2.6) 		12.2
(0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 40
(2.6)
A 		0.6
(-3)
A 		6.8
(-2.1)
A 		12
(-1.4)
A 		15.7
(-0.9)
A 		43.1
(3)
P 		43
B 1.2
(-3)
A 		18.6
(0.1)
A 		1
(-3)
A 		2.7
(-2.7)
A 		34.4
(2.9)
A 		34.8
(3)
A 		34
C 1
(-3)
A 		7.6
(-1.7)
A 		3.2
(-2.6)
A 		21.9
(1.2)
A 		18.4
(0.5)
A 		30.8
(3)
A 		30
avr 14.1
(-1.1) 		8.9
(-2) 		3.7
(-3) 		12.2
(-1.4) 		22.8
(0.5) 		36.2
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.6
(-3)
A 		1.7
(-2.7)
A 		3.7
(3)
A 		3.5
(2.4)
A 		2
B 6.1
(3)
A 		1.8
(-3)
A 		4.3
(0.5)
A 		1.9
(-2.9)
A 		4
C 1.4
(-2.4)
A 		7.5
(3)
A 		2.8
(-1.1)
A 		0.7
(-3)
A 		7
avr 3
(0.5) 		3.7
(3) 		3.6
(2.6) 		2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.4
(1.2)
A 		0.2
(-3)
A 		1.5
(-2.2)
A 		3
(-1.4)
A 		4.7
(-0.4)
A 		10.5
(3)
P 		10
B 0.4
(-2.9)
A 		6.2
(-0.4)
A 		0.2
(-3)
A 		0.7
(-2.8)
A 		14
(3)
A 		13
(2.6)
A 		14
C 0.4
(-3)
A 		2.3
(-1.8)
A 		0.8
(-2.8)
A 		4.4
(-0.6)
A 		6
(0.4)
A 		10.3
(3)
A 		10
avr 2.7
(-1.9) 		2.9
(-1.8) 		0.8
(-3) 		2.7
(-1.9) 		8.2
(1.2) 		11.3
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19366
Sequence Type Exemplar sequence
Representative Public ID ZK616.D NCBI
Target Description ZK616.D /REP_DB=WormBase Gene ID /WP=CE26346 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60945.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068405 NCBI Caenorhabditis elegans ZK616.7 (ZK616.7) mRNA, complete cds. 11/11 A 
SNAP00000016319 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5408414:5410280:-1 11/11 None
GENEFINDER00000016323 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5408414:5412137:-1 11/11 None
ZK616.7 ENSEMBL cdna:known chromosome:CEL140:IV:5408414:5409417:-1 gene:ZK616.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5408419-5409423(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK616.7
Entrez Gene 191361 Entrez gene
SwissProt Q9N4M9 EMBL-EBI
WormBase CE26346 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB88365 Hypothetical protein M04G7.2 [Caenorhabditis elegans] ref|NP_499934.1| M04G7.2 [Caenorhabditis elegans] 0.0
blast AAF60945 Hypothetical protein ZK616.7 [Caenorhabditis elegans] ref|NP_500806.1| ZK616.7 [Caenorhabditis elegans] 1.0E-169
blast AAB88365 Hypothetical protein M04G7.2 [Caenorhabditis elegans] ref|NP_499934.1| M04G7.2 [Caenorhabditis elegans] 1.0E-161
blast CAE67290 Hypothetical protein CBG12739 [Caenorhabditis briggsae] 1.0E-152
blast CAE67290 Hypothetical protein CBG12739 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-100
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-100
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.4E-100
Sequence
Target Sequence 
>C. ELEGANS:176863_AT
caggagaacacaacggcgatcgtgatgctctgtcaattcaccgagacgaatcgtgagaaa
tgcgccgagtacttcccgagaaatgcgcattgttgcttgcaattcgacaagatgagtgta
agctacgaggattcaacggtgaacaagtctctggtgacgactcgtctcaatttgagctat
gagggcgagactcgactgattactcactggttatggaaggaatggcccgactggcaggtg
cctggatcctcagaggtcatgctgaagattttgagaaagatcagagcgagaagtacacct
ccagttattcattgttcggcgggagttggccgttcgggaacgctgatggctgttgagatt
gcgttgcaatcgattcatagtcatttcacgctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGAGAACACAACGGCGATCGTGA 444 207 295 Antisense
ACACAACGGCGATCGTGATGCTCTG 627 109 302 Antisense
GAGAAATGCGCATTGTTGCTTGCAA 206 393 372 Antisense
TGCGCATTGTTGCTTGCAATTCGAC 398 583 378 Antisense
GCAATTCGACAAGATGAGTGTAAGC 9 323 393 Antisense
TGAGTGTAAGCTACGAGGATTCAAC 191 567 407 Antisense
GTGACGACTCGTCTCAATTTGAGCT 259 483 448 Antisense
GGGCGAGACTCGACTGATTACTCAC 668 491 477 Antisense
GACTCGACTGATTACTCACTGGTTA 209 375 483 Antisense
GATTACTCACTGGTTATGGAAGGAA 236 431 492 Antisense
CGATTCATAGTCATTTCACGCTGCC 174 249 665 Antisense
Sequence Source Affymetrix Proprietary Database