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[176862_at]

Description Y1B5A.A /REP_DB=WormBase Gene ID /WP=CE24189 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59431.1
Cluster 6grp_total > 64      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 18.5
(-1.8)
A 		7.2
(-3)
A 		7.3
(-3)
A 		66
(3)
A 		59
B 12.4
(-0.1)
A 		4.5
(-3)
A 		20.7
(3)
A 		11
(-0.6)
A 		16
C 36
(-0.2)
A 		8.7
(-3)
A 		14.2
(-2.4)
A 		66.4
(3)
A 		58
avr 22.3
(-0.7) 		6.8
(-3) 		14.1
(-1.9) 		47.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 42.5
(3)
A 		2
(-3)
A 		36.1
(2.1)
A 		14
(-1.2)
A 		26.7
(0.7)
A 		16.9
(-0.8)
A 		41
B 2.8
(-3)
A 		9
(-1.8)
A 		14.3
(-0.8)
A 		34.3
(3)
A 		3.6
(-2.8)
A 		29.8
(2.1)
A 		32
C 4.8
(-2.7)
A 		3.7
(-3)
A 		34.5
(3)
A 		9.7
(-1.8)
A 		3.5
(-3)
A 		19.9
(0.2)
A 		31
avr 16.7
(0) 		4.9
(-3) 		28.3
(3) 		19.3
(0.7) 		11.3
(-1.4) 		22.2
(1.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.7
(0.8)
A 		1.6
(-3)
A 		1.9
(-2.8)
A 		9.7
(3)
A 		8
B 4
(1.7)
A 		1.1
(-3)
A 		4.8
(3)
A 		2.3
(-1.1)
A 		4
C 11.9
(3)
A 		2.5
(-3)
A 		4.9
(-1.5)
A 		11.2
(2.6)
A 		9
avr 7.5
(2.8) 		1.7
(-3) 		3.9
(-0.8) 		7.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.8
(2.8)
A 		0.7
(-3)
A 		7.9
(2.8)
A 		3.6
(-0.6)
A 		8.1
(3)
A 		4.1
(-0.2)
A 		7
B 1
(-3)
A 		3
(-1.8)
A 		3.5
(-1.5)
A 		9.1
(1.8)
A 		1.5
(-2.7)
A 		11.1
(3)
A 		10
C 1.8
(-2.5)
A 		1.1
(-3)
A 		8.8
(3)
A 		1.9
(-2.4)
A 		1.1
(-3)
A 		6.7
(1.4)
A 		8
avr 3.5
(-1) 		1.6
(-3) 		6.7
(2.4) 		4.9
(0.5) 		3.6
(-0.9) 		7.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19560
Sequence Type Exemplar sequence
Representative Public ID Y1B5A.A NCBI
Target Description Y1B5A.A /REP_DB=WormBase Gene ID /WP=CE24189 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59431.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076791 NCBI Caenorhabditis elegans Y1B5A.1 (Y1B5A.1) mRNA, complete cds. 11/11 None
Y1B5A.1 ENSEMBL cdna:known chromosome:CEL140:X:7085314:7085586:1 gene:Y1B5A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7085312-7085585(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y1B5A.1
Entrez Gene 189350 Entrez gene
SwissProt Q9N479 EMBL-EBI
WormBase CE24189 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59431 Hypothetical protein Y1B5A.1 [Caenorhabditis elegans] ref|NP_509192.1| Y1B5A.1 [Caenorhabditis elegans] 1.0E-44
Sequence
Target Sequence 
>C. ELEGANS:176862_AT
tattgagtctattgtccgctggaacaatgaagtagtagaactcatgagctttccagacac
tgaagtgagcagatccgttgaaatagaacaatggacgactcttgtccatggagaaatacc
ggcagtagctgcttctgataagacgcggaaagtccaaagcaaccaaattccatccttgtg
tcgcactgcctccatccagaatgtgaccttcatcgcacatttggattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGAGTCTATTGTCCGCTGGAAC 265 665 24 Antisense
AACTCATGAGCTTTCCAGACACTGA 267 141 62 Antisense
GACACTGAAGTGAGCAGATCCGTTG 597 367 79 Antisense
GACGACTCTTGTCCATGGAGAAATA 495 379 117 Antisense
GGAGAAATACCGGCAGTAGCTGCTT 235 519 133 Antisense
GTAGCTGCTTCTGATAAGACGCGGA 440 457 148 Antisense
GACGCGGAAAGTCCAAAGCAACCAA 274 381 165 Antisense
CAACCAAATTCCATCCTTGTGTCGC 113 187 183 Antisense
ACTGCCTCCATCCAGAATGTGACCT 693 97 208 Antisense
CCATCCAGAATGTGACCTTCATCGC 305 271 215 Antisense
GACCTTCATCGCACATTTGGATTCG 445 383 228 Antisense
Sequence Source Affymetrix Proprietary Database