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[176860_at]

Description F36D3.1B /REP_DB=WormBase Gene ID /WP=CE25872 /CHR=5 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB97234.1
Cluster 6grp_total > 70      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 39.1
(2)
A 		16.9
(-3)
A 		43.5
(3)
P 		34.1
(0.9)
A 		27
B 46.6
(-0.7)
A 		27.5
(-2.7)
A 		24.3
(-3)
A 		83.6
(3)
M 		59
C 33.1
(-1.4)
A 		15.9
(-3)
A 		57.1
(0.9)
A 		79.5
(3)
P 		64
avr 39.6
(-0.4) 		20.1
(-3) 		41.6
(-0.2) 		65.7
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 50.4
(1.6)
A 		51
(1.7)
A 		58
(3)
P 		31.6
(-1.9)
A 		41.8
(-0)
A 		25.7
(-3)
A 		32
B 53.5
(-1.1)
A 		40.3
(-3)
A 		49.3
(-1.7)
A 		82.4
(3)
P 		47.5
(-2)
P 		53.2
(-1.2)
P 		42
C 30.8
(-3)
A 		57.7
(1.4)
A 		43.2
(-1)
P 		67.4
(3)
A 		56.6
(1.2)
A 		66.7
(2.9)
P 		37
avr 44.9
(-3) 		49.7
(-1.2) 		50.2
(-1) 		60.5
(3) 		48.6
(-1.6) 		48.5
(-1.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.2
(3)
A 		3.7
(-3)
A 		11.4
(1.4)
P 		5
(-2.3)
A 		11
B 14.9
(1.6)
A 		6.8
(-2.4)
A 		5.6
(-3)
A 		17.8
(3)
M 		12
C 11
(-0.5)
A 		4.6
(-3)
A 		19.9
(3)
A 		13.4
(0.5)
P 		15
avr 13.4
(3) 		5
(-3) 		12.3
(2.2) 		12.1
(2.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.3
(-1.5)
A 		18.1
(3)
A 		12.6
(0.2)
P 		8
(-2.1)
A 		12.6
(0.2)
A 		6.3
(-3)
A 		12
B 18.6
(1)
A 		13.4
(-2.1)
A 		12
(-3)
A 		21.8
(3)
P 		19.3
(1.5)
P 		19.8
(1.8)
P 		10
C 11.4
(-2.8)
A 		17.6
(0.5)
A 		11
(-3)
P 		13.5
(-1.7)
A 		18.3
(0.9)
A 		22.3
(3)
P 		11
avr 13.1
(-1.5) 		16.4
(2.6) 		11.9
(-3) 		14.4
(0.1) 		16.7
(3) 		16.1
(2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13215
Sequence Type Exemplar sequence
Representative Public ID F36D3.1B NCBI
Target Description F36D3.1B /REP_DB=WormBase Gene ID /WP=CE25872 /CHR=5 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB97234.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074777 NCBI Caenorhabditis elegans F36D3.1 (F36D3.1) mRNA, complete cds. 11/11 A 
SNAP00000025144 ENSEMBL cdna:SNAP chromosome:CEL140:V:16501952:16505276:1 11/11 None
GENEFINDER00000025159 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16501952:16505276:1 11/11 None
F36D3.1.2 ENSEMBL cdna:known chromosome:CEL140:V:16501933:16505276:1 gene:F36D3.1 11/11 None
F36D3.1.1 ENSEMBL cdna:known chromosome:CEL140:V:16501934:16505450:1 gene:F36D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16501951-16505276(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D3.1
Entrez Gene 180105 Entrez gene
SwissProt O45458 EMBL-EBI
WormBase CE25872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04314 Hypothetical protein F36D3.1 [Caenorhabditis elegans] ref|NP_507178.1| F36D3.1 [Caenorhabditis elegans] 0.0
blast CAE62933 Hypothetical protein CBG07140 [Caenorhabditis briggsae] 7.0E-79
Sequence
Target Sequence 
>C. ELEGANS:176860_AT
accccttgctcagactcgggaaatggttttccttccaaacaaatgacaaaagaagaaaga
agaagcaatggcacgaaaacgcctacttgagcattactgcatccagagaagtggaagttc
ctgatccaaaagttaccagagtcgttgacgacggtcaaggtggtaaagaagttgagattg
acacaagttttttgttcgatcatgaaatgctcgaagagccgagtaatagagattgtgaag
actggaatttgagacacaaagggctcagtaagagagcccatttttgggattttgagctcg
gaatggtggagatttatccgaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCCTTGCTCAGACTCGGGAAATG 142 91 764 Antisense
GCAATGGCACGAAAACGCCTACTTG 135 321 828 Antisense
AAACGCCTACTTGAGCATTACTGCA 405 119 840 Antisense
GAGCATTACTGCATCCAGAGAAGTG 323 389 852 Antisense
GAAGTTCCTGATCCAAAAGTTACCA 545 337 877 Antisense
AAAGTTACCAGAGTCGTTGACGACG 49 123 892 Antisense
TGACGACGGTCAAGGTGGTAAAGAA 65 401 909 Antisense
GACACAAGTTTTTTGTTCGATCATG 197 367 943 Antisense
AAGAGAGCCCATTTTTGGGATTTTG 27 153 1033 Antisense
TGGGATTTTGAGCTCGGAATGGTGG 464 549 1048 Antisense
GAATGGTGGAGATTTATCCGAATCA 282 333 1064 Antisense
Sequence Source Affymetrix Proprietary Database