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[176854_s_at]

Description F56B3.11B /REP_DB=WormBase Gene ID /WP=CE25908 /GB=AAK29832.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 67      6grp_total > 34      4grp_total > 33      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2085
1 2 3 4 range
A 1907.3
(-3)
P 		3297.3
(1)
P 		2977.3
(0.1)
P 		3992.5
(3)
P 		2085
B 1940.1
(-3)
P 		3178.8
(2.2)
P 		3197
(2.3)
P 		3363.9
(3)
P 		1424
C 2202
(-3)
P 		3160.3
(2.2)
P 		2976.9
(1.2)
P 		3307
(3)
P 		1105
avr 2016.5
(-3) 		3212.1
(1.7) 		3050.4
(1) 		3554.5
(3) 		1538

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 881
1 2 3 4 5 6 range
A 2189.7
(2.6)
P 		2173.6
(2.4)
P 		2248.4
(3)
P 		1831.8
(-0.2)
P 		1462.1
(-3)
P 		1609.7
(-1.9)
P 		786
B 1902.6
(0.4)
P 		2124.9
(3)
P 		1810.8
(-0.7)
P 		1823.5
(-0.5)
P 		1610.1
(-3)
P 		1634.8
(-2.7)
P 		515
C 2042.5
(3)
P 		2001.4
(2.6)
P 		2001.2
(2.6)
P 		1631
(-0.7)
P 		1367.8
(-3)
P 		1760
(0.5)
P 		675
avr 2044.9
(2.5) 		2100
(3) 		2020.1
(2.2) 		1762.1
(-0.3) 		1480
(-3) 		1668.2
(-1.2) 		620
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 480
1 2 3 4 range
A 694.4
(0.4)
P 		715.8
(1.1)
P 		778.3
(3)
P 		584.4
(-3)
P 		194
B 618.7
(-3)
P 		785.1
(3)
P 		740.8
(1.4)
P 		716.9
(0.5)
P 		166
C 728.9
(-0.9)
P 		908.6
(1.4)
P 		1037.5
(3)
P 		557.6
(-3)
P 		480
avr 680.7
(-1.4) 		803.2
(1.7) 		852.2
(3) 		619.6
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 403.7
(-2.8)
P 		773.1
(3)
P 		489.7
(-1.5)
P 		464.6
(-1.9)
P 		441.2
(-2.2)
P 		391.9
(-3)
P 		381
B 662
(2)
P 		707.3
(3)
P 		439.7
(-3)
P 		483
(-2)
P 		654.2
(1.8)
P 		609.6
(0.8)
P 		268
C 757.1
(3)
P 		610.7
(1)
P 		509.3
(-0.5)
P 		328
(-3)
P 		442.6
(-1.4)
P 		589.2
(0.7)
P 		429
avr 607.6
(1) 		697
(3) 		479.6
(-1.8) 		425.2
(-3) 		512.7
(-1.1) 		530.2
(-0.7) 		272
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176854_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11007
Sequence Type Exemplar sequence
Representative Public ID F56B3.11B NCBI
Target Description F56B3.11B /REP_DB=WormBase Gene ID /WP=CE25908 /GB=AAK29832.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067590(11), NM_067591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067590 NCBI Caenorhabditis elegans F56B3.11a (F56B3.11) mRNA, complete cds. 11/11 A 
NM_067591 NCBI Caenorhabditis elegans F56B3.11b (F56B3.11) mRNA, complete cds. 11/11 A 
SNAP00000041569 ENSEMBL cdna:SNAP chromosome:CEL140:IV:794752:796459:-1 9/11 None
GENEFINDER00000041581 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:795818:796562:-1 11/11 None
F56B3.11a ENSEMBL cdna:known chromosome:CEL140:IV:795806:796562:-1 gene:F56B3.11 11/11 A 
F56B3.11b ENSEMBL cdna:known chromosome:CEL140:IV:795824:796562:-1 gene:F56B3.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:795954-796568(-) 100.0 100.0
Public Domain and Genome References
Ensembl F56B3.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast F88632 protein F56B3.4 [imported] - Caenorhabditis elegans 1.0E-159
blast AAK29831 Hypothetical protein F56B3.11a [Caenorhabditis elegans] ref|NP_499991.1| F56B3.11a [Caenorhabditis elegans] 1.0E-119
blast F88632 protein F56B3.4 [imported] - Caenorhabditis elegans 1.0E-107
blast AAK29832 Hypothetical protein F56B3.11b [Caenorhabditis elegans] ref|NP_499992.1| F56B3.11b [Caenorhabditis elegans] 1.0E-104
blast CAE56267 Hypothetical protein CBG23912 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001232 EMBL-EBI SKP1 component 7.5E-24
Pfam IPR001232 EMBL-EBI SKP1 component 4.6E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499991.1 1 81-103
NP_499992.1 1 81-103
F56B3.11a 1 81-103
F56B3.11b 1 81-103
SNAP00000041569 1 63-85
GENEFINDER00000041581 1 81-103
Sequence
Target Sequence 
>C. ELEGANS:176854_S_AT
gacaccgctcagcaaactttgtgcaggtgcagtcacgcaaaatgtgctgaaaagctactt
cctaacaccatcccaatttcgcagcttctcccgaacgatcacagcacttgaaaaatcaca
gaaatcaccctcaaaacaggaacatgcgctccagagatcgattttggaggaagttttggt
gcatgagaaggcgaaaccgacgacatttggcggaaaagtcgctgaaaaggcgtcgaacac
gtttatgtacacggcagttgtcgctggaatcggtctaattggtgcatttatctatgtgct
cgccggggaatttttcgctcaagattccccgcagacaattttcaataagttggtttttca
cttttttccgggaaaaaccaatttaaatcaaatattttttgcagagctctcgcattggta
cgtgatgatggccgttgtcaggaaatattcggcgcctcaatcgccggattcggcgaggaa
acgtcacgtggacgccgccgccacgtggcacatcacaagtacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACCGCTCAGCAAACTTTGTGCA 26 369 15 Antisense
TGAAAAGCTACTTCCTAACACCATC 359 573 62 Antisense
GGAACATGCGCTCCAGAGATCGATT 252 529 153 Antisense
GAAGGCGAAACCGACGACATTTGGC 378 333 201 Antisense
TGTACACGGCAGTTGTCGCTGGAAT 651 557 260 Antisense
GGTGCATTTATCTATGTGCTCGCCG 516 501 295 Antisense
TCGCCGGGGAATTTTTCGCTCAAGA 641 593 314 Antisense
GATTCCCCGCAGACAATTTTCAATA 248 433 337 Antisense
GGTACGTGATGATGGCCGTTGTCAG 61 503 431 Antisense
TATTCGGCGCCTCAATCGCCGGATT 561 659 460 Antisense
CGCCACGTGGCACATCACAAGTACG 307 257 513 Antisense
Sequence Source Affymetrix Proprietary Database