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[176853_at]

Description Y40B10A.5 /REP_DB=WormBase Gene ID /WP=CE26081 /GB=AAK70660.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 38      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 119.4
(3)
P 		47.4
(-3)
A 		62.1
(-1.8)
A 		71.7
(-1)
A 		72
B 91.1
(3)
P 		56.6
(-0.4)
P 		30.5
(-3)
A 		45.5
(-1.5)
A 		61
C 106.8
(3)
P 		84.2
(0.7)
M 		47.6
(-3)
A 		58.4
(-1.9)
A 		59
avr 105.8
(3) 		62.7
(-1.4) 		46.7
(-3) 		58.5
(-1.8) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 94.1
(2.4)
A 		101.8
(3)
P 		62.1
(-0.2)
P 		36.7
(-2.3)
A 		46.4
(-1.5)
P 		28.5
(-3)
A 		73
B 79.1
(3)
P 		78.6
(3)
P 		46.4
(-0.2)
M 		71.7
(2.3)
P 		17.6
(-3)
A 		29.9
(-1.8)
A 		62
C 93.2
(3)
P 		92.1
(2.9)
A 		54.8
(0)
P 		62.2
(0.6)
A 		39.7
(-1.1)
A 		15.4
(-3)
A 		78
avr 88.8
(2.8) 		90.8
(3) 		54.4
(-0.3) 		56.9
(-0.1) 		34.6
(-2.1) 		24.6
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 43.5
(3)
P 		10.3
(-3)
A 		16.2
(-1.9)
A 		10.5
(-3)
A 		33
B 29.1
(3)
P 		14
(-1.1)
P 		7.1
(-3)
A 		9.7
(-2.3)
A 		22
C 35.3
(3)
P 		24.2
(0.4)
M 		16.6
(-1.4)
A 		9.9
(-3)
A 		25
avr 36
(3) 		16.2
(-1.6) 		13.3
(-2.2) 		10
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 17.3
(-0.9)
A 		36.2
(3)
P 		13.5
(-1.6)
P 		9.3
(-2.5)
A 		14
(-1.5)
P 		6.9
(-3)
A 		29
B 27.5
(3)
P 		26.2
(2.6)
P 		11.3
(-1.8)
M 		19
(0.5)
P 		7.2
(-3)
A 		11.2
(-1.8)
A 		20
C 34.5
(3)
P 		28.1
(1.7)
A 		13.9
(-1.2)
P 		12.5
(-1.5)
A 		12.8
(-1.4)
A 		5.2
(-3)
A 		29
avr 26.4
(2) 		30.2
(3) 		12.9
(-1.6) 		13.6
(-1.4) 		11.3
(-2.1) 		7.8
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15323
Sequence Type Exemplar sequence
Representative Public ID Y40B10A.5 NCBI
Target Description Y40B10A.5 /REP_DB=WormBase Gene ID /WP=CE26081 /GB=AAK70660.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071156 NCBI Caenorhabditis elegans Y40B10A.5 (Y40B10A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000009388 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2043180:2045873:-1 11/11 None
Y40B10A.5 ENSEMBL cdna:known chromosome:CEL140:V:2044554:2045097:-1 gene:Y40B10A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009374 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2044553-2045097(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B10A.5
Entrez Gene 189788 Entrez gene
SwissProt Q965W5 EMBL-EBI
WormBase CE26081 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE66787 Hypothetical protein CBG12147 [Caenorhabditis briggsae] 3.0E-98
blast AAK70660 Hypothetical protein Y40B10A.5 [Caenorhabditis elegans] ref|NP_503557.1| Y40B10A.5 [Caenorhabditis elegans] 1.0E-82
blast AAK70660 Hypothetical protein Y40B10A.5 [Caenorhabditis elegans] ref|NP_503557.1| Y40B10A.5 [Caenorhabditis elegans] 4.0E-64
blast CAE66787 Hypothetical protein CBG12147 [Caenorhabditis briggsae] 3.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503557.1 3 29-60,80-102,115-137
Y40B10A.5 3 29-60,80-102,115-137
GENEFINDER00000009388 5 21-43,56-78,106-128,143-165,202-224
Sequence
Target Sequence 
>C. ELEGANS:176853_AT
tggtgcttgcttatttttcgatgtaatattcggcatcacttattttagcgctggtgttta
tcgtgcaattctagttattatttatgatagattcccactcgtctccatgtgggattgttt
catgactgtacacaatcaattcttcatattaattgtagttatggctggaattacattagt
tttcaccgcaatcgatcgatttatatgtgtattttttccatttcgatatttgaaacttca
cattgagtacgcgtatatgcttatgtttttgccatatctcattgttatcccgttgtggat
tcctgctgcaattggtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGCTTGCTTATTTTTCGATGTA 300 553 108 Antisense
TCGGCATCACTTATTTTAGCGCTGG 378 607 137 Antisense
AGCGCTGGTGTTTATCGTGCAATTC 709 81 154 Antisense
TTTATGATAGATTCCCACTCGTCTC 294 669 188 Antisense
CACTCGTCTCCATGTGGGATTGTTT 669 195 203 Antisense
GACTGTACACAATCAATTCTTCATA 706 375 231 Antisense
TAGTTTTCACCGCAATCGATCGATT 401 641 284 Antisense
GAGTACGCGTATATGCTTATGTTTT 390 399 352 Antisense
TTTGCCATATCTCATTGTTATCCCG 488 669 375 Antisense
TGTTATCCCGTTGTGGATTCCTGCT 594 561 390 Antisense
GTGGATTCCTGCTGCAATTGGTGCA 580 489 402 Antisense
Sequence Source Affymetrix Proprietary Database