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[176850_at]

Description Y111B2A.20 /REP_DB=WormBase Gene ID /WP=CE24129 /GB=CAC35849.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 74      6grp_total > 90      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 575
1 2 3 4 range
A 484.9
(-3)
P 		855.6
(2.4)
P 		895.1
(3)
P 		557.5
(-1.9)
P 		410
B 532.6
(-1.9)
P 		815.9
(1.1)
P 		997.8
(3)
P 		422.6
(-3)
P 		575
C 523.1
(-2.6)
P 		945.2
(2.7)
P 		969.9
(3)
P 		488.1
(-3)
P 		482
avr 513.5
(-2.7) 		872.2
(1.9) 		954.3
(3) 		489.4
(-3) 		465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 834.5
(3)
P 		655.6
(-2.9)
P 		652.9
(-3)
P 		802.8
(2)
P 		682.1
(-2)
P 		696.9
(-1.5)
P 		182
B 816.6
(3)
P 		729.3
(0.2)
P 		631
(-3)
P 		756.9
(1.1)
P 		725.3
(0)
P 		779.9
(1.8)
P 		186
C 682.6
(-2.2)
P 		671
(-2.6)
P 		708.4
(-1.3)
P 		825.7
(3)
P 		660.6
(-3)
P 		738.7
(-0.2)
P 		165
avr 777.9
(2.2) 		685.3
(-2) 		664.1
(-3) 		795.1
(3) 		689.3
(-1.8) 		738.5
(0.4) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 176.5
(0.7)
P 		185.7
(1.1)
P 		234
(3)
P 		81.6
(-3)
P 		152
B 169.9
(0.4)
P 		201.5
(1.7)
P 		231.2
(3)
P 		90
(-3)
P 		141
C 173.2
(-0.9)
P 		271.8
(1.4)
P 		338.1
(3)
P 		82.3
(-3)
P 		256
avr 173.2
(-0.1) 		219.7
(1.4) 		267.8
(3) 		84.6
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 153.8
(-2.2)
P 		233.1
(3)
P 		142.2
(-3)
P 		203.6
(1.1)
P 		205.8
(1.2)
P 		169.7
(-1.2)
P 		91
B 284.1
(2.6)
P 		242.8
(0.8)
P 		153.2
(-3)
P 		200.5
(-1)
P 		294.7
(3)
P 		290.8
(2.8)
P 		142
C 253
(3)
P 		204.8
(-0.3)
P 		180.3
(-2)
P 		166
(-3)
P 		213.8
(0.3)
P 		247.3
(2.6)
P 		87
avr 230.3
(2.4) 		226.9
(2.2) 		158.6
(-3) 		190
(-0.6) 		238.1
(3) 		235.9
(2.8) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7764
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.20 NCBI
Target Description Y111B2A.20 /REP_DB=WormBase Gene ID /WP=CE24129 /GB=CAC35849.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067251 NCBI Caenorhabditis elegans Y111B2A.20 (Y111B2A.20) mRNA, complete cds. 11/11 None
GENEFINDER00000006274 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12700844:12713542:1 11/11 None
SNAP00000006171 ENSEMBL cdna:SNAP chromosome:CEL140:III:12711448:12713542:1 11/11 None
Y111B2A.20 ENSEMBL cdna:known chromosome:CEL140:III:12711435:12713749:1 gene:Y111B2A.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12711430-12713538(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y111B2A.20
Entrez Gene 176690 Entrez gene
SwissProt Q9BHL2 EMBL-EBI
WormBase CE24129 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261485_AT UDP-galactose/UDP-glucose transporter, putative at
CANINE:1583881_AT similar to solute carrier family 35, member B1 cfa
CANINE_2:CFAAFFX.25900.1.S1_AT similar to solute carrier family 35, member B1 cfa
CANINE_2:CFAAFFX.25900.1.S1_S_AT similar to solute carrier family 35, member B1 cfa
DROSOPHILA_2:1625250_AT dm
DROSGENOME1:150300_AT dm
CHICKEN:GGA.1484.1.S1_AT solute carrier family 35, member B1 gga
HG-U133A_2:202433_AT solute carrier family 35, member B1 hs
HG-U133A:202433_AT solute carrier family 35, member B1 hs
HG-U133_PLUS_2:202433_AT solute carrier family 35, member B1 hs
HG-FOCUS:202433_AT solute carrier family 35, member B1 hs
HUGENEFL:D87989_AT solute carrier family 35, member B1 hs
U133_X3P:G5032212_3P_AT solute carrier family 35, member B1 hs
HG-U95AV2:40056_AT solute carrier family 35, member B1 hs
MG-U74AV2:100091_AT solute carrier family 35, member B1 mm
MU11KSUBA:D87990_S_AT solute carrier family 35, member B1 mm
MOE430A:1448769_AT solute carrier family 35, member B1 mm
MOUSE430A_2:1448769_AT solute carrier family 35, member B1 mm
MOUSE430_2:1448769_AT solute carrier family 35, member B1 mm
MU19KSUBC:TC39002_I_AT Solute carrier family 35, member B1, mRNA (cDNA clone MGC:5917 IMAGE:3592141) mm
RG-U34A:D87991_G_AT galactose transporter rn
RG-U34A:D87991_AT galactose transporter rn
RG-U34B:RC_AI011155_AT galactose transporter rn
RAE230A:1377143_AT galactose transporter rn
RAT230_2:1377143_AT galactose transporter rn
RAE230A:1375871_AT galactose transporter rn
RAT230_2:1375871_AT galactose transporter rn
YEAST_2:1774102_AT Protein with a role in UDP-galactose transport to the Golgi lumen, has similarity to human UDP-galactose transporter UGTrel1, exhibits a genetic interaction with S. cerevisiae ERO1 Sc
Protein Similarities
Method ID Description E-Value
blast CAC35849 Hypothetical protein Y111B2A.20 [Caenorhabditis elegans] ref|NP_499652.1| Y111B2A.20 [Caenorhabditis elegans] 0.0
blast CAC35853 Hypothetical protein Y111B2A.24 [Caenorhabditis elegans] ref|NP_499651.1| Y111B2A.24 [Caenorhabditis elegans] 1.0E-179
blast CAE57526 Hypothetical protein CBG00501 [Caenorhabditis briggsae] 1.0E-155
blast CAC35849 Hypothetical protein Y111B2A.20 [Caenorhabditis elegans] ref|NP_499652.1| Y111B2A.20 [Caenorhabditis elegans] 1.0E-155
blast CAE57526 Hypothetical protein CBG00501 [Caenorhabditis briggsae] 1.0E-154
blast CAE57526 Hypothetical protein CBG00501 [Caenorhabditis briggsae] 1.0E-137
blast NP_989418 endoplasmic reticulum nucleotide sugar transporter [Xenopus tropicalis] emb|CAD54627.1| endoplasmic reticulum nucleotide sugar transporter [Silurana tropicalis] 4.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 4.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499652.1 5 21-40,60-81,94-116,145-164,216-238
Y111B2A.20 5 21-40,60-81,94-116,145-164,216-238
GENEFINDER00000006274 4 678-697,710-732,761-780,832-854
SNAP00000006171 4 26-45,58-80,109-128,180-202
Sequence
Target Sequence 
>C. ELEGANS:176850_AT
atattcggagtcttgttcgcacataaaagctatcactggcgcaagtactgttacgtactg
atgattgtcgtcggcgttgcaatgtttttgtataaaaataagaaaggcggtgccgaggac
aaggactttggatttggagagctgcttttgatattctcacttgcaatggacggaaccact
acctcaattcaggatagaatcaagaaatcatatcagaggacgggtacttctatgatgttc
tacacgaatttatattctagtctttatttgtcagcgggcctcctcgtaaccggtgaactt
tggtcgttcttctatttcgtacaacgtcatccatacgttttctgggatttaaccgggctc
gcaattgcttcatgcctcggacaatggtgcatattcaagacaatcgaagagttctcaccg
ttgacttgctcaattgtcacgacaacacggaaattgttcacaattataatatcggtgctc
ttcatgaatcatccgctctctggacgccaaattctcgccacgacagtcgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCGGAGTCTTGTTCGCACATA 541 17 412 Antisense
CGTACTGATGATTGTCGTCGGCGTT 373 247 465 Antisense
ACGGAACCACTACCTCAATTCAGGA 588 95 581 Antisense
GAGGACGGGTACTTCTATGATGTTC 426 403 627 Antisense
CTAGTCTTTATTTGTCAGCGGGCCT 431 223 668 Antisense
TTTGGTCGTTCTTCTATTTCGTACA 411 667 710 Antisense
TTCTGGGATTTAACCGGGCTCGCAA 99 695 751 Antisense
TGCTTCATGCCTCGGACAATGGTGC 536 579 777 Antisense
TCGAAGAGTTCTCACCGTTGACTTG 462 601 815 Antisense
TCGGTGCTCTTCATGAATCATCCGC 181 607 883 Antisense
CAAATTCTCGCCACGACAGTCGTTT 171 193 919 Antisense
Sequence Source Affymetrix Proprietary Database