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[176849_at] 7TM chemoreceptor, srsx family

Description Y97E10B.4 /REP_DB=WormBase Gene ID /WP=CE26325 /GB=AAK71414.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 02      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 7
(-2.5)
A 		1.9
(-3)
A 		3.7
(-2.8)
A 		66
(3)
A 		64
B 7.4
(2)
A 		1.7
(-3)
A 		3.4
(-1.5)
A 		8.6
(3)
A 		7
C 8.1
(-2.8)
A 		12.3
(-2.6)
A 		5.5
(-3)
A 		102.1
(3)
A 		97
avr 7.5
(-2.6) 		5.3
(-2.9) 		4.2
(-3) 		58.9
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 6
(-1.1)
A 		5
(-1.6)
A 		15.8
(3)
A 		1.6
(-3)
A 		5.9
(-1.2)
A 		3
(-2.4)
A 		14
B 3.1
(-3)
A 		8.3
(-1.1)
A 		5.4
(-2.2)
A 		3.8
(-2.7)
A 		19.5
(3)
A 		3.9
(-2.7)
A 		16
C 11.1
(-2.2)
A 		73.2
(3)
A 		2.1
(-3)
A 		8.8
(-2.4)
A 		1.8
(-3)
A 		15.6
(-1.8)
A 		71
avr 6.7
(-2.5) 		28.8
(3) 		7.8
(-2.2) 		4.7
(-3) 		9.1
(-1.9) 		7.5
(-2.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.5
(-1.6)
A 		0.4
(-3)
A 		1
(-2.6)
A 		9.7
(3)
A 		9
B 2.3
(3)
A 		0.4
(-3)
A 		0.8
(-1.7)
A 		1.8
(1.4)
A 		2
C 2.7
(-2.7)
A 		3.5
(-2.4)
A 		1.9
(-3)
A 		17.2
(3)
A 		15
avr 2.5
(-2.1) 		1.4
(-2.9) 		1.2
(-3) 		9.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.1
(-1.6)
A 		1.8
(-0.2)
A 		3.4
(3)
A 		0.4
(-3)
A 		1.8
(-0.2)
A 		0.7
(-2.4)
A 		3
B 1.1
(-2.9)
A 		2.8
(-1.4)
A 		1.3
(-2.7)
A 		1
(-3)
A 		7.9
(3)
A 		1.5
(-2.6)
A 		7
C 4.1
(-2)
A 		22.3
(3)
A 		0.5
(-3)
A 		1.8
(-2.6)
A 		0.6
(-3)
A 		5.2
(-1.7)
A 		22
avr 2.1
(-2.2) 		9
(3) 		1.7
(-2.5) 		1.1
(-3) 		3.4
(-1.3) 		2.5
(-1.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11578
Sequence Type Exemplar sequence
Representative Public ID Y97E10B.4 NCBI
Target Description Y97E10B.4 /REP_DB=WormBase Gene ID /WP=CE26325 /GB=AAK71414.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072635 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-7) (srsx-7) mRNA, complete cds. 11/11 None
GENEFINDER00000041708 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7928374:7929511:1 11/11 None
Y97E10B.4 ENSEMBL cdna:known chromosome:CEL140:V:7928374:7929347:1 gene:Y97E10B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7928374-7929348(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-7
Ensembl Y97E10B.4
Entrez Gene 190819 Entrez gene
SwissProt Q965R8 EMBL-EBI
WormBase CE26325 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71414 Serpentine receptor, class sx protein 7 [Caenorhabditis elegans] ref|NP_505036.1| Serpentine Receptor, class SX family member (srsx-7) [Caenorhabditis elegans] 1.0E-151
blast AAK71414 Serpentine receptor, class sx protein 7 [Caenorhabditis elegans] ref|NP_505036.1| Serpentine Receptor, class SX family member (srsx-7) [Caenorhabditis elegans] 1.0E-150
blast AAK71413 Serpentine receptor, class sx protein 6 [Caenorhabditis elegans] ref|NP_505037.1| Serpentine Receptor, class SX family member (srsx-6) [Caenorhabditis elegans] 5.0E-62
blast AAK71413 Serpentine receptor, class sx protein 6 [Caenorhabditis elegans] ref|NP_505037.1| Serpentine Receptor, class SX family member (srsx-6) [Caenorhabditis elegans] 8.0E-61
blast AAK71412 Serpentine receptor, class sx protein 5 [Caenorhabditis elegans] ref|NP_505038.2| Serpentine Receptor, class SX family member (srsx-5) [Caenorhabditis elegans] 1.0E-58
blast AAK71412 Serpentine receptor, class sx protein 5 [Caenorhabditis elegans] ref|NP_505038.2| Serpentine Receptor, class SX family member (srsx-5) [Caenorhabditis elegans] 2.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505036.1 7 15-37,49-71,89-111,123-145,174-193,214-236,241-263
Y97E10B.4 7 15-37,49-71,89-111,123-145,174-193,214-236,241-263
GENEFINDER00000041708 7 15-37,49-71,89-111,123-145,174-193,214-236,243-265
Sequence
Target Sequence 
>C. ELEGANS:176849_AT
gatgttggattagctttcccagatattcagttggatagaacatcctgttttcacgttatg
attccatttattttctttgaagcggcccaagcagtcatcattttagagctagttgctgat
gtttatataatcgtgaaactaccagttctctataaaaaatgtgatacgtggatgtatcta
tcaggtgctctagtggttccttcaattgttggagcaatatttgtgagctggggattcacg
aatttggactacgaagaaatctatttttgtagtccaacttcgtccctgcacaccgtggca
agtaaaaactacacacgatgcattgttctaacaaacacattaaccgttatcatatttgcc
acgttgataacaatattttataagaaaagcaagaataataataaagaatctacaaaagta
atgaaacgtcttcaattctcagttgcagtgtttctaggatcttggtatattaccattttc
acatattacgtatgcatcgccgttggtgtgacaggagaagatttacactttgtaatcaat
aatatgtcatttttcacatgtcttgcatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTGGATTAGCTTTCCCAGATA 259 409 211 Antisense
GAACATCCTGTTTTCACGTTATGAT 448 351 248 Antisense
TATTTTCTTTGAAGCGGCCCAAGCA 336 663 279 Antisense
CGGCCCAAGCAGTCATCATTTTAGA 102 243 293 Antisense
GTGGATGTATCTATCAGGTGCTCTA 65 491 378 Antisense
GTGCTCTAGTGGTTCCTTCAATTGT 661 477 395 Antisense
TCCCTGCACACCGTGGCAAGTAAAA 637 597 493 Antisense
GTCTTCAATTCTCAGTTGCAGTGTT 180 469 638 Antisense
GTTGCAGTGTTTCTAGGATCTTGGT 357 439 652 Antisense
TATGCATCGCCGTTGGTGTGACAGG 257 655 701 Antisense
GTCATTTTTCACATGTCTTGCATAT 437 467 756 Antisense
Sequence Source Affymetrix Proprietary Database