[Home] | [Total List]

[176848_at]

Description Y65B4BL.1 /REP_DB=WormBase Gene ID /WP=CE25535 /GB=AAF60849.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 27.7
(-3)
A 		34.2
(-2.3)
A 		39
(-1.8)
A 		85.2
(3)
A 		58
B 21.8
(-3)
A 		45.9
(3)
A 		34.8
(0.2)
A 		23.8
(-2.5)
A 		24
C 17.9
(-3)
A 		20.5
(-2.3)
A 		38.3
(2.5)
A 		40.3
(3)
A 		22
avr 22.5
(-3) 		33.5
(-0.6) 		37.4
(0.3) 		49.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 9.1
(-2)
A 		3.8
(-3)
A 		17.5
(-0.3)
A 		25.5
(1.2)
A 		13.9
(-1)
A 		34.5
(3)
M 		31
B 24.9
(-0.7)
A 		31
(1)
A 		16.9
(-3)
A 		38.2
(3)
M 		18.9
(-2.4)
A 		32.1
(1.3)
P 		21
C 17.7
(-3)
A 		22.3
(-2)
A 		44.9
(3)
A 		42.4
(2.4)
P 		28.9
(-0.5)
A 		30.3
(-0.2)
P 		27
avr 17.2
(-3) 		19
(-2.4) 		26.4
(0) 		35.4
(3) 		20.6
(-1.9) 		32.3
(2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 10.1
(0.2)
A 		7.4
(-3)
A 		10.2
(0.3)
A 		12.5
(3)
A 		5
B 7
(-1.2)
A 		11.3
(3)
A 		8.1
(-0.1)
A 		5.1
(-3)
A 		6
C 5.9
(-3)
A 		5.9
(-3)
A 		13.3
(3)
A 		6.8
(-2.3)
A 		7
avr 7.7
(-3) 		8.2
(-1.9) 		10.5
(3) 		8.1
(-2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.7
(-2.7)
A 		1.3
(-3)
A 		3.8
(-0.9)
A 		6.5
(1.4)
A 		4.2
(-0.5)
A 		8.4
(3)
M 		7
B 8.7
(0.5)
A 		10.3
(1.7)
A 		4.1
(-3)
A 		10.1
(1.6)
M 		7.7
(-0.3)
A 		12
(3)
P 		8
C 6.6
(-3)
A 		6.8
(-2.8)
A 		11.4
(3)
A 		8.5
(-0.6)
P 		9.4
(0.5)
A 		10.1
(1.4)
P 		5
avr 5.7
(-3) 		6.1
(-2.5) 		6.4
(-2.1) 		8.4
(0.6) 		7.1
(-1.1) 		10.2
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2544
Sequence Type Exemplar sequence
Representative Public ID Y65B4BL.1 NCBI
Target Description Y65B4BL.1 /REP_DB=WormBase Gene ID /WP=CE25535 /GB=AAF60849.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058345 NCBI Caenorhabditis elegans Y65B4BL.1 (Y65B4BL.1) mRNA, complete cds. 11/11 A 
Y65B4BL.1 ENSEMBL cdna:known chromosome:CEL140:I:530569:532855:1 gene:Y65B4BL.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040881 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:530568-531888(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65B4BL.1
Entrez Gene 171644 Entrez gene
SwissProt Q9N300 EMBL-EBI
WormBase CE29898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60849 Hypothetical protein Y65B4BL.1 [Caenorhabditis elegans] ref|NP_490746.2| Y65B4BL.1 [Caenorhabditis elegans] 0.0
blast CAE61288 Hypothetical protein CBG05111 [Caenorhabditis briggsae] 1.0E-164
blast NP_508084 R57.2 [Caenorhabditis elegans] gb|AAB52661.3| Hypothetical protein R57.2 [Caenorhabditis elegans] 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 5.8E-26
Sequence
Target Sequence 
>C. ELEGANS:176848_AT
cagtctcgacagttggtggtcaccccacctgcgccttgattaccccgcccgtccgcgccc
gccgggctaaagtattttgtttgccattcatgttcctcattcgacgttcatcatgcttct
gttatgcttcttggtgttggtccgaaacttttttctacacaatgctcccagacagcccat
ccccacgcgctgcccttgctctctccgatcttcagccacaaaccggcgcctcaacgttct
caattggcagtggatcaggcaactggtcgacaagaggtgttggtggagttaatggtgatt
acatggacaaatccggcggaggaatgttcggaaacagcagaaacaacgaccgattcgcat
tcggcaacaacagctcgtcgtcctcatcagcaggctgcttttcatcgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCTCGACAGTTGGTGGTCACCC 375 207 23 Antisense
TTTGTTTGCCATTCATGTTCCTCAT 157 667 98 Antisense
CTCATTCGACGTTCATCATGCTTCT 172 229 118 Antisense
TCATGCTTCTGTTATGCTTCTTGGT 603 621 133 Antisense
GCTTCTTGGTGTTGGTCCGAAACTT 327 305 148 Antisense
AACTTTTTTCTACACAATGCTCCCA 256 139 168 Antisense
TTCTACACAATGCTCCCAGACAGCC 710 689 175 Antisense
GCAGTGGATCAGGCAACTGGTCGAC 99 311 269 Antisense
GCAGAAACAACGACCGATTCGCATT 101 311 359 Antisense
GATTCGCATTCGGCAACAACAGCTC 390 433 374 Antisense
TCAGCAGGCTGCTTTTCATCGAACA 514 623 409 Antisense
Sequence Source Affymetrix Proprietary Database