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[176846_at]

Description Y97E10B.1 /REP_DB=WormBase Gene ID /WP=CE26321 /GB=AAK71410.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 12      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 36.8
(0.2)
A 		6.8
(-3)
A 		27
(-0.8)
A 		62.8
(3)
A 		56
B 33.1
(-0.4)
A 		26.4
(-1)
A 		2.1
(-3)
A 		73.9
(3)
P 		72
C 25
(-0.9)
A 		26.3
(-0.8)
A 		3.4
(-3)
A 		64.7
(3)
A 		61
avr 31.6
(-0.8) 		19.8
(-2) 		10.8
(-3) 		67.1
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 17.9
(-2.2)
A 		4.8
(-2.9)
A 		16.1
(-2.3)
A 		108.8
(3)
P 		46.1
(-0.6)
A 		3.1
(-3)
A 		106
B 32.5
(-0.9)
A 		5
(-3)
A 		23.3
(-1.6)
A 		82.3
(3)
P 		71.4
(2.2)
P 		31.1
(-1)
A 		77
C 6.2
(-3)
A 		34.1
(-1.1)
A 		8
(-2.9)
A 		93.8
(3)
P 		47.6
(-0.2)
P 		16.1
(-2.3)
A 		88
avr 18.9
(-2.7) 		14.6
(-3) 		15.8
(-2.9) 		95
(3) 		55
(0) 		16.8
(-2.8) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13.4
(3)
A 		1.5
(-3)
A 		7.1
(-0.2)
A 		9.2
(0.9)
A 		12
B 10.6
(1)
A 		6.5
(-0.6)
A 		0.5
(-3)
A 		15.7
(3)
P 		15
C 8.3
(1.4)
A 		7.6
(1)
A 		1.2
(-3)
A 		10.9
(3)
A 		10
avr 10.8
(2.3) 		5.2
(-1.5) 		2.9
(-3) 		11.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.3
(-2.4)
A 		1.7
(-2.8)
A 		3.5
(-2.4)
A 		27.6
(3)
P 		13.9
(-0.1)
A 		0.8
(-3)
A 		27
B 11.3
(-0.9)
A 		1.7
(-3)
A 		5.7
(-2.1)
A 		21.8
(1.4)
P 		29
(3)
P 		11.6
(-0.8)
A 		27
C 2.3
(-2.9)
A 		10.4
(-0)
A 		2
(-3)
A 		18.9
(3)
P 		15.4
(1.8)
P 		5.4
(-1.8)
A 		17
avr 5.6
(-2.4) 		4.6
(-2.7) 		3.7
(-3) 		22.8
(3) 		19.4
(1.9) 		5.9
(-2.3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12428
Sequence Type Exemplar sequence
Representative Public ID Y97E10B.1 NCBI
Target Description Y97E10B.1 /REP_DB=WormBase Gene ID /WP=CE26321 /GB=AAK71410.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072642 NCBI Caenorhabditis elegans Y97E10B.1 (Y97E10B.1) mRNA, complete cds. 11/11 None
Y97E10B.1 ENSEMBL cdna:known chromosome:CEL140:V:7946470:7949448:1 gene:Y97E10B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7946470-7949449(+) 97.68 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10B.1
Entrez Gene 190816 Entrez gene
SwissProt Q965R1 EMBL-EBI
WormBase CE26321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71410 Hypothetical protein Y97E10B.1 [Caenorhabditis elegans] ref|NP_505043.1| Y97E10B.1 [Caenorhabditis elegans] 0.0
blast CAE64028 Hypothetical protein CBG08623 [Caenorhabditis briggsae] 0.0
blast CAA92519 Hypothetical protein F49C12.5a [Caenorhabditis elegans] ref|NP_501627.1| F49C12.5a [Caenorhabditis elegans] sp|Q20593|YE25_CAEEL Hypothetical protein F49C12.5 in chromosome IV 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505043.1 1 12-34
Y97E10B.1 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:176846_AT
tgtggtcgatcctagaagtctcaactacacttggatacattttccgcctattctgcctaa
tggattagagaaatacgaagtgaatgaaaatgtcattactcatttgaagactattttctg
ggtaagaatagataatagctctgaacaagattcgagaagtaaacaattaattgagcccat
gtattttgataattcaactgcaaaaataatatcaagcaggacgattttgagcattgagga
cgatcttcgtagaatgatgagaaagccaaaacttcgagagatattcaagaatcttccaaa
tattcattatttcactgatttaattgtcaaatgttataatgatcgatattataggtatca
ttattctggaagaatcggagaaattaaatgccctggaccacagttgtgtagttttcaaca
acatccaaaaatcaagtgtatgcatgtaaatgcaactcatgattctatggatacactgtt
tccaattacttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGTCGATCCTAGAAGTCTCAAC 621 555 1233 Antisense
GAAGTCTCAACTACACTTGGATACA 217 337 1247 Antisense
ACACTTGGATACATTTTCCGCCTAT 607 109 1259 Antisense
TTTCCGCCTATTCTGCCTAATGGAT 47 671 1273 Antisense
GAGCCCATGTATTTTGATAATTCAA 566 385 1405 Antisense
AAGCAGGACGATTTTGAGCATTGAG 93 151 1446 Antisense
TTGAGCATTGAGGACGATCTTCGTA 652 701 1459 Antisense
GGAGAAATTAAATGCCCTGGACCAC 112 517 1609 Antisense
AATGCCCTGGACCACAGTTGTGTAG 219 167 1619 Antisense
GCAACTCATGATTCTATGGATACAC 41 321 1684 Antisense
GGATACACTGTTTCCAATTACTTAT 408 509 1701 Antisense
Sequence Source Affymetrix Proprietary Database