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[176845_s_at]

Description Y19D10A.7 /REP_DB=WormBase Gene ID /WP=CE17004 /GB=AAK68420.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 3.8
(-3)
A 		20.9
(3)
A 		10.1
(-0.8)
A 		14.4
(0.7)
A 		17
B 30.6
(3)
A 		7.3
(-2.7)
A 		28.3
(2.4)
A 		6
(-3)
A 		25
C 3.5
(-3)
A 		28.3
(0.2)
A 		20.8
(-0.8)
A 		49.7
(3)
A 		46
avr 12.6
(-3) 		18.8
(0.4) 		19.7
(0.9) 		23.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 6.5
(-1.4)
A 		5.3
(-1.8)
A 		3.8
(-2.3)
A 		2.1
(-2.8)
A 		20.2
(3)
A 		1.6
(-3)
A 		19
B 24.1
(0.6)
A 		39.5
(3)
A 		4
(-2.5)
A 		3.2
(-2.7)
A 		2.2
(-2.8)
A 		1
(-3)
A 		39
C 7.4
(1.7)
A 		6.5
(0.9)
A 		7.4
(1.7)
A 		2.7
(-2.5)
A 		2.1
(-3)
A 		8.8
(3)
A 		7
avr 12.7
(1.2) 		17.1
(3) 		5.1
(-2) 		2.7
(-3) 		8.2
(-0.7) 		3.8
(-2.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(-3)
A 		4.5
(3)
A 		2.6
(-0.7)
A 		2.1
(-1.6)
A 		3
B 9.8
(3)
A 		1.8
(-2.6)
A 		6.6
(0.7)
A 		1.3
(-3)
A 		9
C 1.1
(-3)
A 		8.1
(2.8)
A 		7.3
(2.1)
A 		8.4
(3)
A 		7
avr 4.1
(-2.3) 		4.8
(0.4) 		5.5
(3) 		3.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-2.2)
A 		1.9
(-1.4)
A 		0.8
(-2.6)
A 		0.5
(-2.9)
A 		6.1
(3)
A 		0.4
(-3)
A 		6
B 8.4
(0.8)
A 		13.2
(3)
A 		1
(-2.7)
A 		0.9
(-2.8)
A 		0.9
(-2.8)
A 		0.4
(-3)
A 		13
C 2.8
(2.8)
A 		2
(0.8)
A 		1.9
(0.5)
A 		0.5
(-3)
A 		0.7
(-2.5)
A 		2.9
(3)
A 		2
avr 4.1
(1.1) 		5.7
(3) 		1.2
(-2.3) 		0.6
(-3) 		2.6
(-0.6) 		1.2
(-2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176845_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15454
Sequence Type Exemplar sequence
Representative Public ID Y19D10A.7 NCBI
Target Description Y19D10A.7 /REP_DB=WormBase Gene ID /WP=CE17004 /GB=AAK68420.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071248(11), NM_071274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071248 NCBI Caenorhabditis elegans Y19D10A.7 (Y19D10A.7) mRNA, complete cds. 11/11 None
NM_071274 NCBI Caenorhabditis elegans F56A4.9 (F56A4.9) mRNA, complete cds. 11/11 None
GENEFINDER00000029981 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2348043:2350153:-1 11/11 None
GENEFINDER00000032960 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2456004:2458114:-1 11/11 None
Y19D10A.7 ENSEMBL cdna:known chromosome:CEL140:V:2348043:2350153:-1 gene:Y19D10A.7 11/11 None
F56A4.9 ENSEMBL cdna:known chromosome:CEL140:V:2456004:2458114:-1 gene:F56A4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2348042-2350153(-) 100.0 100.0
chrV:2456003-2458114(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y19D10A.7
F56A4.9
Entrez Gene 186352 Entrez gene
189485 Entrez gene
SwissProt Q9N5R1 EMBL-EBI
Q966E0 EMBL-EBI
WormBase CE23778 Wormbase
CE17004 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503649 Y19D10A.7 [Caenorhabditis elegans] gb|AAK68420.1| Hypothetical protein Y19D10A.7 [Caenorhabditis elegans] 0.0
blast AAF39847 Hypothetical protein F56A4.9 [Caenorhabditis elegans] ref|NP_503675.1| F56A4.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.9E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.7E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.7E-18
Sequence
Target Sequence 
>C. ELEGANS:176845_S_AT
gaggatttctgcatcacaactcaagaaatgcagactttcatcaccacagagtttgcttca
ctaaactgtagaccatgcaagatttgcgaaaacaatgtaaatatgtgcaatgactcacta
gagaacttgttagataattgtacacatgttaatggaaatgttatgataggacctgaaaat
gagcatcttgtaagtaagctgaagatagttgaaacaatatacggaagcttgattatcagg
agcaccaatttgactcatattgcgttcttagagaatttgaagcatattttaacttttaac
tatagcgtttcaattattatcgaaaacaatccgcagttttcaaatttaacatttccaaat
ttaaagcgtatctacacaaactccttgctcactgccattatgctcaacaacaacagtgac
attttatctcccaactttaaaaattgtgacctgattcatgcacaattcaaatacctgaaa
accaagtcaatctcgctagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATTTCTGCATCACAACTCAAG 507 403 595 Antisense
AAATGCAGACTTTCATCACCACAGA 636 117 620 Antisense
TCACCACAGAGTTTGCTTCACTAAA 596 623 635 Antisense
GCTTCACTAAACTGTAGACCATGCA 252 305 649 Antisense
AGCTTGATTATCAGGAGCACCAATT 280 79 820 Antisense
ATTTGACTCATATTGCGTTCTTAGA 286 17 842 Antisense
AAGCGTATCTACACAAACTCCTTGC 601 149 958 Antisense
TGCTCACTGCCATTATGCTCAACAA 200 581 980 Antisense
ACAGTGACATTTTATCTCCCAACTT 669 107 1007 Antisense
GTGACCTGATTCATGCACAATTCAA 657 481 1040 Antisense
GAAAACCAAGTCAATCTCGCTAGAT 314 355 1071 Antisense
Sequence Source Affymetrix Proprietary Database