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[176843_s_at]

Description F41H10.6A /REP_DB=WormBase Gene ID /WP=CE20772 /GB=AAK29809.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      6grp_total > 67      4grp_total > 03      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 120
(-2.4)
A 		140.3
(-2.1)
A 		75
(-3)
A 		503.4
(3)
P 		428
B 209.2
(-0.9)
A 		106.5
(-3)
A 		161.9
(-1.9)
A 		399.7
(3)
P 		293
C 151.1
(-1.8)
P 		106.2
(-2.7)
A 		88.7
(-3)
A 		412.1
(3)
P 		323
avr 160.1
(-2.1) 		117.7
(-2.8) 		108.5
(-3) 		438.4
(3) 		330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 97.3
(-3)
A 		277.8
(-0.1)
M 		178.6
(-1.7)
P 		203.3
(-1.3)
P 		225.3
(-1)
A 		473.5
(3)
P 		376
B 167.5
(-2.7)
P 		173.5
(-2.6)
P 		188.4
(-2.4)
P 		187.6
(-2.4)
P 		150.4
(-3)
P 		503.3
(3)
P 		353
C 160.1
(-2.4)
A 		268.2
(-0.8)
P 		171.2
(-2.2)
A 		117.6
(-3)
A 		195.3
(-1.9)
P 		525.4
(3)
P 		408
avr 141.6
(-3) 		239.8
(-1.4) 		179.4
(-2.4) 		169.5
(-2.5) 		190.3
(-2.2) 		500.7
(3) 		359
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 43.7
(-0.3)
A 		30.5
(-1.8)
A 		19.6
(-3)
A 		73.7
(3)
P 		54
B 66.7
(1.1)
A 		26.3
(-3)
A 		37.5
(-1.9)
A 		85.2
(3)
P 		59
C 50
(0)
P 		30.5
(-3)
A 		30.9
(-2.9)
A 		69.5
(3)
P 		39
avr 53.5
(0.1) 		29.1
(-3) 		29.3
(-3) 		76.1
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 17.9
(-3)
A 		98.8
(2)
M 		38.9
(-1.7)
P 		51.5
(-0.9)
P 		68
(0.1)
A 		115.3
(3)
P 		97
B 58.3
(-2.5)
P 		57.8
(-2.5)
P 		45.7
(-3)
P 		49.7
(-2.8)
P 		61.1
(-2.3)
P 		187.7
(3)
P 		142
C 59.4
(-1.6)
A 		81.8
(-0.7)
P 		43.6
(-2.2)
A 		23.6
(-3)
A 		63.2
(-1.4)
P 		175.9
(3)
P 		152
avr 45.2
(-2.8) 		79.5
(-1.1) 		42.7
(-2.9) 		41.6
(-3) 		64.1
(-1.9) 		159.6
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176843_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10587
Sequence Type Exemplar sequence
Representative Public ID F41H10.6A NCBI
Target Description F41H10.6A /REP_DB=WormBase Gene ID /WP=CE20772 /GB=AAK29809.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068387 NCBI Caenorhabditis elegans F41H10.6a (F41H10.6) mRNA, complete cds. 11/11 None
SNAP00000003902 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5356601:5360072:-1 11/11 None
GENEFINDER00000003921 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5356601:5359215:-1 11/11 None
F41H10.6a ENSEMBL cdna:known chromosome:CEL140:IV:5356555:5364257:-1 gene:F41H10.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177316 2 1 NM_068387 176843_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5357600-5364216(-) 100.0 100.0
Public Domain and Genome References
Ensembl F41H10.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29809 Hypothetical protein F41H10.6a [Caenorhabditis elegans] ref|NP_500788.1| F41H10.6a [Caenorhabditis elegans] 0.0
blast AAK29810 Hypothetical protein F41H10.6b [Caenorhabditis elegans] ref|NP_500787.1| F41H10.6b [Caenorhabditis elegans] sp|Q20296|HDA6_CAEEL Histone deactylase 0.0
blast CAE72722 Hypothetical protein CBG19959 [Caenorhabditis briggsae] 0.0
blast AAK29809 Hypothetical protein F41H10.6a [Caenorhabditis elegans] ref|NP_500788.1| F41H10.6a [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 1.0E-126
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 1.1E-105
Pfam IPR001607 EMBL-EBI Zn-finger in ubiquitin thiolesterase 1.4E-20
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 4.0E-85
Pfam IPR001607 EMBL-EBI Zn-finger in ubiquitin thiolesterase 1.4E-20
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 4.0E-85
Sequence
Target Sequence 
>C. ELEGANS:176843_S_AT
gaaaggttttcagattatcatcggaagtgtgctcaattcgaagcttatcaataaaaatgg
aaaatcgtcggcagcaacgctgaaagtcaaaggaaaagctgcaacggatccagtgaaaca
agccgatgattctcgtcgttacaatactcgtcgacgtcgatctgcaaatgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGGTTTTCAGATTATCATCGGA 223 361 2388 Antisense
GATTATCATCGGAAGTGTGCTCAAT 444 429 2400 Antisense
GTGTGCTCAATTCGAAGCTTATCAA 619 487 2414 Antisense
GGAAAATCGTCGGCAGCAACGCTGA 114 527 2446 Antisense
GCAGCAACGCTGAAAGTCAAAGGAA 340 313 2458 Antisense
AAAGCTGCAACGGATCCAGTGAAAC 155 125 2482 Antisense
AACGGATCCAGTGAAACAAGCCGAT 206 119 2490 Antisense
GTGAAACAAGCCGATGATTCTCGTC 165 483 2500 Antisense
TGATTCTCGTCGTTACAATACTCGT 110 565 2514 Antisense
CAATACTCGTCGACGTCGATCTGCA 373 181 2529 Antisense
GTCGACGTCGATCTGCAAATGATGA 162 475 2537 Antisense
Sequence Source Affymetrix Proprietary Database