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[176841_s_at]

Description Y51H7C.6B /REP_DB=WormBase Gene ID /WP=CE26152 /GB=AAK39339.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 39      4grp_high_8_8 > 45      6grp_total > 19      4grp_total > 50      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 83.3
(-1.2)
P 		110.7
(3)
P 		92.6
(0.2)
P 		71.3
(-3)
A 		39
B 86.5
(-1.7)
P 		133.3
(3)
P 		111.9
(0.9)
P 		73.5
(-3)
P 		60
C 76.2
(-2.6)
P 		121.3
(3)
P 		93.7
(-0.4)
P 		73.1
(-3)
P 		48
avr 82
(-1.9) 		121.8
(3) 		99.4
(0.3) 		72.6
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 64.1
(-1.4)
A 		100.6
(3)
P 		58.5
(-2.1)
P 		51.1
(-3)
P 		55.3
(-2.5)
P 		97
(2.6)
P 		50
B 87.3
(3)
P 		42.2
(-3)
P 		55.7
(-1.2)
P 		72.5
(1)
M 		64.2
(-0.1)
P 		50.4
(-1.9)
P 		45
C 81.4
(2.4)
P 		55.4
(-0.6)
P 		76.3
(1.8)
P 		69.5
(1)
A 		86.5
(3)
P 		35
(-3)
A 		52
avr 77.6
(3) 		66.1
(-1.1) 		63.5
(-2) 		64.4
(-1.7) 		68.7
(-0.2) 		60.8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 30.3
(3)
P 		24
(1.1)
P 		24.2
(1.2)
P 		10.4
(-3)
A 		20
B 27.6
(1.2)
P 		32.9
(3)
P 		25.9
(0.6)
P 		15.7
(-3)
P 		17
C 25.2
(0.4)
P 		34.9
(3)
P 		32.7
(2.4)
P 		12.3
(-3)
P 		23
avr 27.7
(2) 		30.6
(3) 		27.6
(2) 		12.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.8
(-3)
A 		35.8
(3)
P 		12.7
(-2.8)
P 		13
(-2.7)
P 		16.7
(-1.8)
P 		23.6
(-0)
P 		24
B 30.4
(3)
P 		14.1
(-2.8)
P 		13.5
(-3)
P 		19.2
(-1)
M 		26.1
(1.5)
P 		18.8
(-1.1)
P 		17
C 30.2
(3)
P 		16.9
(-1.3)
P 		19.4
(-0.5)
P 		14
(-2.3)
A 		28
(2.3)
P 		11.7
(-3)
A 		19
avr 24.1
(3) 		22.3
(1.8) 		15.2
(-3) 		15.4
(-2.9) 		23.6
(2.7) 		18
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176841_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5020
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.6B NCBI
Target Description Y51H7C.6B /REP_DB=WormBase Gene ID /WP=CE26152 /GB=AAK39339.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061565(11), NM_061566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061565 NCBI Caenorhabditis elegans Y51H7C.6a (Y51H7C.6) mRNA, complete cds. 11/11 A 
NM_061566 NCBI Caenorhabditis elegans Y51H7C.6b (Y51H7C.6) mRNA, complete cds. 11/11 None
SNAP00000035525 ENSEMBL cdna:SNAP chromosome:CEL140:II:1403331:1408977:1 11/11 None
GENEFINDER00000035542 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1403331:1408977:1 11/11 None
Y51H7C.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:1403327:1409124:1 gene:Y51H7C.6 11/11 A 
Y51H7C.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:1403350:1409124:1 gene:Y51H7C.6 11/11 A 
Y51H7C.6b ENSEMBL cdna:known chromosome:CEL140:II:1403617:1406396:1 gene:Y51H7C.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1403615-1406351(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y51H7C.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39338 Hypothetical protein Y51H7C.6a [Caenorhabditis elegans] ref|NP_493966.1| Y51H7C.6a [Caenorhabditis elegans] sp|Q95XZ0|COG4_CAEEL Putative conserved oligomeric Golgi complex component 0.0
blast CAE62968 Hypothetical protein CBG07185 [Caenorhabditis briggsae] 0.0
blast AAK39339 Hypothetical protein Y51H7C.6b [Caenorhabditis elegans] ref|NP_493967.1| Y51H7C.6b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176841_S_AT
gaatcttccagtacttgaacactcgtacggcctggaaaagttgctggatttcatgtttat
tttgcaggcaagaattgacgagtttttccgacgccttcatgaagaattcgacacccgacg
ccgactttcccacttcaatcgccttgtcgatgacgtcattcatcagaaaaaagcagcgga
agccgtcgaggatgctccagatccgatggaaatcgatgcgatagcttctgagatttgtat
gatgaatacgtcggcggaaatgtattggagatttgtttctagaagaattgggaagaatga
agtgattagaagtccttctggagacggcgatgatgaggaaaacgaggaagctcggcaaga
acgacacaggcttaggaaggaagctaaagagcagaaaatggatcagctgttaaatagaag
ccgtgttgggacgaaaatgcaggaattaattggcaattattgtcttttggagcattttta
tatgttaaaatcggtacagaaggctataaaatccgatgtgaaagaggatgctggtggctt
gacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTTCCAGTACTTGAACACTCG 208 329 897 Antisense
TGAACACTCGTACGGCCTGGAAAAG 660 573 912 Antisense
GGATTTCATGTTTATTTTGCAGGCA 40 511 942 Antisense
GTTTTTCCGACGCCTTCATGAAGAA 371 449 978 Antisense
TCGCCTTGTCGATGACGTCATTCAT 13 599 1035 Antisense
GCAGCGGAAGCCGTCGAGGATGCTC 69 315 1069 Antisense
GTCGAGGATGCTCCAGATCCGATGG 39 471 1081 Antisense
TCGATGCGATAGCTTCTGAGATTTG 371 601 1109 Antisense
GAAGTCCTTCTGGAGACGGCGATGA 569 335 1205 Antisense
GAAGCTCGGCAAGAACGACACAGGC 374 343 1243 Antisense
AAGAGGATGCTGGTGGCTTGACGAG 261 153 1418 Antisense
Sequence Source Affymetrix Proprietary Database