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[176840_at]

Description Y51H7C.12 /REP_DB=WormBase Gene ID /WP=CE26148 /GB=AAK39343.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 51      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 6.6
(-2.4)
A 		7.9
(-2.1)
A 		26.9
(3)
A 		4.5
(-3)
A 		22
B 6.4
(-2.8)
A 		71.4
(3)
A 		8.9
(-2.5)
A 		3.6
(-3)
A 		68
C 26.8
(3)
A 		8.5
(-2.2)
A 		20.9
(1.3)
A 		5.5
(-3)
A 		21
avr 13.3
(-0.9) 		29.3
(3) 		18.9
(0.5) 		4.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 10.1
(-2.8)
A 		7.6
(-3)
A 		42.8
(0.1)
A 		75
(3)
P 		30.5
(-1)
A 		32.9
(-0.7)
A 		67
B 4.7
(-3)
A 		4.1
(-3)
A 		26.7
(-1.6)
A 		102.8
(3)
P 		44.3
(-0.6)
P 		32.3
(-1.3)
A 		99
C 5.4
(-3)
A 		7.6
(-2.9)
A 		55.5
(0.3)
A 		95.6
(3)
P 		51.6
(0.1)
P 		22.5
(-1.9)
A 		90
avr 6.7
(-3) 		6.4
(-3) 		41.7
(-0.5) 		91.1
(3) 		42.1
(-0.5) 		29.2
(-1.4) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.4
(-1.4)
A 		1.7
(-2)
A 		7
(3)
A 		0.7
(-3)
A 		6
B 2
(-2.6)
A 		17.6
(3)
A 		2.1
(-2.5)
A 		0.8
(-3)
A 		17
C 8.9
(3)
A 		2.4
(-1.9)
A 		7.3
(1.8)
A 		0.9
(-3)
A 		8
avr 4.4
(0.4) 		7.2
(3) 		5.5
(1.4) 		0.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.9
(-3)
A 		2.7
(-2.7)
A 		9.3
(-0.4)
A 		19
(3)
P 		9.2
(-0.4)
A 		8
(-0.9)
A 		17
B 1.7
(-2.9)
A 		1.4
(-3)
A 		6.5
(-1.8)
A 		27.2
(3)
P 		18
(0.9)
P 		12.1
(-0.5)
A 		26
C 2
(-3)
A 		2.3
(-2.9)
A 		14.1
(1.2)
A 		19.2
(3)
P 		16.7
(2.1)
P 		7.5
(-1.1)
A 		17
avr 1.9
(-3) 		2.1
(-2.9) 		10
(-0.6) 		21.8
(3) 		14.6
(0.8) 		9.2
(-0.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176840_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4769
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.12 NCBI
Target Description Y51H7C.12 /REP_DB=WormBase Gene ID /WP=CE26148 /GB=AAK39343.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061573 NCBI Caenorhabditis elegans Y51H7C.12 (Y51H7C.12) mRNA, complete cds. 11/11 None
SNAP00000035528 ENSEMBL cdna:SNAP chromosome:CEL140:II:1438531:1442582:-1 11/11 None
GENEFINDER00000035546 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1440095:1444324:-1 10/11 None
Y51H7C.12 ENSEMBL cdna:known chromosome:CEL140:II:1440072:1444579:-1 gene:Y51H7C.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1440070-1444578(-) 99.34 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.12
Entrez Gene 190179 Entrez gene
SwissProt Q95XY3 EMBL-EBI
WormBase CE26148 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39343 Hypothetical protein Y51H7C.12 [Caenorhabditis elegans] ref|NP_493974.1| Y51H7C.12 [Caenorhabditis elegans] 0.0
blast AAK39343 Hypothetical protein Y51H7C.12 [Caenorhabditis elegans] ref|NP_493974.1| Y51H7C.12 [Caenorhabditis elegans] 1.0E-175
blast AAK39343 Hypothetical protein Y51H7C.12 [Caenorhabditis elegans] ref|NP_493974.1| Y51H7C.12 [Caenorhabditis elegans] 1.0E-145
blast CAB07607 Hypothetical protein F28G4.4 [Caenorhabditis elegans] ref|NP_507111.2| F28G4.4 [Caenorhabditis elegans] 1.0E-123
blast CAB07605 Hypothetical protein F28G4.2 [Caenorhabditis elegans] ref|NP_507110.1| F28G4.2 [Caenorhabditis elegans] 1.0E-116
blast CAB07607 Hypothetical protein F28G4.4 [Caenorhabditis elegans] ref|NP_507111.2| F28G4.4 [Caenorhabditis elegans] 1.0E-107
blast CAB07605 Hypothetical protein F28G4.2 [Caenorhabditis elegans] ref|NP_507110.1| F28G4.2 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176840_AT
ttggtccatgcatcaggacaccctctggaccggaagctttgaccagttggaactcgagtc
tcgatatggaaattacaacctaatcctggacaccatcggtaacgaaactccatattactt
ccggaataaggatttggcgtgtggtgccacgttttttgtcagagggggtcctgtgtccta
tcagttttttcaacaggtaatctcatttatgctgacatttcaaagccccgactcaacaat
catgagttatttatgcagtcatcagggatataaatgcaaattcctgccacattccatatc
gtcttcatttaactatttcgagagtccacgtgagatggttccggttttaatacaaattga
tggtggtcggaaagatggagactcgaagatggatgttttgaaacggcaaaacttggtttt
tacatttgaaaatggaacttgtaacgagaaagctgtgagggagttgagagaaaccatcaa
aacaagctttcaatccctaattcgccaggattggtccctggaagagaactggttcggctc
aggcgtcttctttttgagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTCCATGCATCAGGACACCCTC 93 705 1062 Antisense
GACCGGAAGCTTTGACCAGTTGGAA 52 383 1089 Antisense
ACCTAATCCTGGACACCATCGGTAA 258 85 1139 Antisense
GAAACTCCATATTACTTCCGGAATA 360 357 1165 Antisense
GGTCCTGTGTCCTATCAGTTTTTTC 642 501 1228 Antisense
ATGCTGACATTTCAAAGCCCCGACT 191 43 1270 Antisense
CACATTCCATATCGTCTTCATTTAA 128 197 1349 Antisense
GAGTCCACGTGAGATGGTTCCGGTT 473 399 1383 Antisense
AAACAAGCTTTCAATCCCTAATTCG 671 127 1541 Antisense
CCCTAATTCGCCAGGATTGGTCCCT 127 85 1556 Antisense
GGCTCAGGCGTCTTCTTTTTGAGAC 268 539 1597 Antisense
Sequence Source Affymetrix Proprietary Database