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[176839_at]

Description Y111B2A.24 /REP_DB=WormBase Gene ID /WP=CE25716 /GB=CAC35853.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 4.6
(-3)
A 		8.6
(-1.2)
A 		10.3
(-0.4)
A 		17.8
(3)
A 		13
B 11.2
(-2.8)
A 		29.3
(-1.1)
A 		8.7
(-3)
A 		74.8
(3)
A 		66
C 14.1
(1.8)
A 		13.1
(1.2)
A 		6.2
(-3)
A 		16.1
(3)
A 		10
avr 10
(-2.7) 		17
(-1.1) 		8.4
(-3) 		36.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 32.4
(1.2)
A 		8.2
(-2.5)
A 		22.7
(-0.3)
A 		4.6
(-3)
A 		24.9
(0.1)
A 		44.4
(3)
A 		40
B 12.2
(-2.3)
A 		9.8
(-2.7)
A 		7.9
(-3)
A 		9.8
(-2.7)
A 		10.8
(-2.5)
A 		46.3
(3)
A 		38
C 11.8
(-2.1)
A 		16.8
(-1.3)
A 		38.8
(1.9)
A 		5.6
(-3)
A 		20.5
(-0.8)
A 		46.2
(3)
A 		41
avr 18.8
(-1.1) 		11.6
(-2.2) 		23.1
(-0.5) 		6.7
(-3) 		18.7
(-1.1) 		45.6
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.7
(-3)
A 		1.9
(-1.8)
A 		2.7
(3)
A 		2.6
(2.4)
A 		1
B 3.6
(-2.3)
A 		7.2
(-0.8)
A 		2
(-3)
A 		15.9
(3)
A 		14
C 4.7
(3)
A 		3.8
(0.8)
A 		2.2
(-3)
A 		2.7
(-1.8)
A 		3
avr 3.3
(-1.8) 		4.3
(-0.5) 		2.3
(-3) 		7.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6
(-0)
A 		2.9
(-1.9)
A 		4.9
(-0.7)
A 		1.2
(-3)
A 		7.5
(0.9)
A 		10.8
(3)
A 		10
B 4.3
(-2.1)
A 		3.2
(-2.5)
A 		1.9
(-3)
A 		2.6
(-2.7)
A 		4.4
(-2)
A 		17.2
(3)
A 		15
C 4.4
(-1.6)
A 		5.1
(-1.3)
A 		9.9
(0.7)
A 		1.1
(-3)
A 		6.6
(-0.7)
A 		15.5
(3)
A 		14
avr 4.9
(-1.5) 		3.7
(-2) 		5.6
(-1.1) 		1.6
(-3) 		6.2
(-0.9) 		14.5
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7666
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.24 NCBI
Target Description Y111B2A.24 /REP_DB=WormBase Gene ID /WP=CE25716 /GB=CAC35853.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067250 NCBI Caenorhabditis elegans Y111B2A.24 (Y111B2A.24) mRNA, complete cds. 11/11 None
GENEFINDER00000006274 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12700844:12713542:1 11/11 None
SNAP00000006170 ENSEMBL cdna:SNAP chromosome:CEL140:III:12707779:12710435:1 11/11 None
Y111B2A.24 ENSEMBL cdna:known chromosome:CEL140:III:12704716:12710435:1 gene:Y111B2A.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12704711-12710431(+) 98.11 100.0
Public Domain and Genome References
Gene Title
Ensembl Y111B2A.24
Entrez Gene 190956 Entrez gene
SwissProt Q9BHL0 EMBL-EBI
WormBase CE25716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35853 Hypothetical protein Y111B2A.24 [Caenorhabditis elegans] ref|NP_499651.1| Y111B2A.24 [Caenorhabditis elegans] 0.0
blast CAC35849 Hypothetical protein Y111B2A.20 [Caenorhabditis elegans] ref|NP_499652.1| Y111B2A.20 [Caenorhabditis elegans] 0.0
blast CAC35853 Hypothetical protein Y111B2A.24 [Caenorhabditis elegans] ref|NP_499651.1| Y111B2A.24 [Caenorhabditis elegans] 1.0E-179
blast CAE57526 Hypothetical protein CBG00501 [Caenorhabditis briggsae] 1.0E-154
blast CAC35853 Hypothetical protein Y111B2A.24 [Caenorhabditis elegans] ref|NP_499651.1| Y111B2A.24 [Caenorhabditis elegans] 1.0E-136
blast CAE60053 Hypothetical protein CBG03565 [Caenorhabditis briggsae] 1.0E-116
blast CAE60053 Hypothetical protein CBG03565 [Caenorhabditis briggsae] 2.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 1.0E-12
Pfam IPR000008 EMBL-EBI C2 domain 4.9E-10
Pfam IPR000008 EMBL-EBI C2 domain 1.0E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006274 4 678-697,710-732,761-780,832-854
Sequence
Target Sequence 
>C. ELEGANS:176839_AT
ggaagttacagtccatcaggctactggattacctcctattgaagatgaaagtggctgcct
cgcaagcccatcaacgctcgtttcaattctcggacgtgacggtgatctccgctcgccggt
attccgcaactctcgaaacccgaactggaattttatggcccgattcgctctaagctccga
acgccggaatctcgtcgtaaaagtgattcatcgaggcgccctccttgatctaccactggg
attcgtctcaattccgcttccaacaccgaatttcagtagatctgtgtatgaaatgacgga
tattacaaagatggccgcaaagtatacacatcaagttccaatgttgacgataagtgtgga
aaaagtgcggaatatcgatgatgatgatgatgatgaggagaataatcatcattatgagca
gtttcggaaaagagctcactcgtcgagaagtacccagtcatctccaccgccgccgtcagc
tcaatatttgctgcgtatcgaatctccgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTTACAGTCCATCAGGCTACT 6 533 789 Antisense
CAGGCTACTGGATTACCTCCTATTG 503 207 805 Antisense
GATGAAAGTGGCTGCCTCGCAAGCC 169 411 832 Antisense
TCAACGCTCGTTTCAATTCTCGGAC 536 631 859 Antisense
CTCGGACGTGACGGTGATCTCCGCT 493 225 877 Antisense
GCAACTCTCGAAACCCGAACTGGAA 248 319 914 Antisense
TTTTATGGCCCGATTCGCTCTAAGC 448 671 939 Antisense
ATCTACCACTGGGATTCGTCTCAAT 107 31 1016 Antisense
TCGAGAAGTACCCAGTCATCTCCAC 700 601 1231 Antisense
GCCGCCGTCAGCTCAATATTTGCTG 669 285 1257 Antisense
TTGCTGCGTATCGAATCTCCGCCAA 492 703 1276 Antisense
Sequence Source Affymetrix Proprietary Database