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[176837_at]

Description Y111B2A.23 /REP_DB=WormBase Gene ID /WP=CE25717 /GB=CAC35852.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 50      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 63.9
(-1.1)
A 		84.4
(3)
A 		64.4
(-1)
A 		54.3
(-3)
A 		30
B 4.6
(-3)
A 		45.3
(3)
A 		30.5
(0.8)
A 		26.5
(0.2)
A 		41
C 45.1
(-0.2)
A 		40.7
(-1.1)
A 		60.4
(3)
A 		31.4
(-3)
A 		29
avr 37.9
(-2.8) 		56.8
(3) 		51.8
(1.5) 		37.4
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 39.6
(-0.7)
A 		40.6
(-0.6)
A 		73.5
(3)
A 		18.4
(-3)
A 		57.6
(1.3)
A 		43.6
(-0.3)
A 		55
B 20.8
(-3)
A 		20.6
(-3)
A 		38.1
(0.2)
A 		53.2
(3)
A 		48.4
(2.1)
A 		31.3
(-1)
A 		33
C 45.4
(0.2)
P 		35.4
(-0.9)
A 		71.5
(3)
A 		24.2
(-2.1)
A 		19.9
(-2.5)
A 		15.5
(-3)
A 		56
avr 35.3
(-2) 		32.2
(-2.6) 		61
(3) 		31.9
(-2.7) 		42
(-0.7) 		30.1
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.3
(3)
A 		18.3
(1)
A 		16.8
(0.5)
A 		8
(-3)
A 		15
B 1.5
(-3)
A 		11.2
(3)
A 		7.1
(0.5)
A 		5.7
(-0.4)
A 		10
C 14.9
(0.6)
A 		11.7
(-0.6)
A 		21.1
(3)
A 		5.3
(-3)
A 		16
avr 13.2
(1.8) 		13.7
(2.1) 		15
(3) 		6.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.3
(-1.8)
A 		14.4
(1.6)
A 		16
(2.3)
A 		4.7
(-3)
A 		17.4
(3)
A 		10.6
(-0.2)
A 		13
B 7.2
(-2.9)
A 		6.9
(-3)
A 		9.2
(-1.9)
A 		14.1
(0.4)
A 		19.7
(3)
A 		11.7
(-0.8)
A 		13
C 16.8
(2.4)
P 		10.8
(-0.3)
A 		18.2
(3)
A 		4.9
(-3)
A 		6.4
(-2.3)
A 		5.2
(-2.9)
A 		13
avr 10.4
(-0.7) 		10.7
(-0.5) 		14.5
(3) 		7.9
(-3) 		14.5
(3) 		9.2
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176837_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7863
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.23 NCBI
Target Description Y111B2A.23 /REP_DB=WormBase Gene ID /WP=CE25717 /GB=CAC35852.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067253
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000006172 ENSEMBL cdna:SNAP chromosome:CEL140:III:12714463:12728515:1 11/11 None
GENEFINDER00000006283 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12725678:12728515:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12714458-12728511(+) 98.83 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35851 Hypothetical protein Y111B2A.22 [Caenorhabditis elegans] ref|NP_499654.2| yeast Swi2/Snf2-Like family member (ssl-1) [Caenorhabditis elegans] 0.0
blast AAS65429 Swi/Snf family ATPase [Caenorhabditis elegans] 0.0
blast CAE57522 Hypothetical protein CBG00497 [Caenorhabditis briggsae] 0.0
blast CAE57522 Hypothetical protein CBG00497 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 3.5E-114
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.6E-28
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.6E-28
Sequence
Target Sequence 
>C. ELEGANS:176837_AT
aaaagctgtgccagttgtacctcggccccaacaacaagcaccaccacagctcatcaaaaa
gcaccagcagactctgatgcctgtgaaggtgctcaagattagtggtggtggtggtggtac
tccaggaccatccagtgtatcgccaggtccatcaatcctccgaagaaccgttgttccagg
cataggcgctggtggtgttggacgcctaccgcttgtcagaatgcctgttcgccctccatt
tcctggctcgcaagctcctgctccaccgctgagaagtggtgttgctccaacagctcctgc
agcagctccacgccagttcgtcgttccgtcgtcgagagttcgagttatcacgacgagaac
tccggtcgccaccaccatggtgcaacaacaacaaagcccgagcccgttgatgtttccagt
ccgggttgtgcaaaggcccgggccatctggaccaccaccacctggacctccagatcgccc
aggatttggaatctatgagaagccgagattctcacttggatcacgaagaagccgtggaga
ttcgggcccggaagatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCTGTGCCAGTTGTACCTCGG 22 133 5202 Antisense
AGCACCAGCAGACTCTGATGCCTGT 148 77 5261 Antisense
GTACTCCAGGACCATCCAGTGTATC 464 459 5318 Antisense
TCCATCAATCCTCCGAAGAACCGTT 640 589 5349 Antisense
GCATAGGCGCTGGTGGTGTTGGACG 299 309 5381 Antisense
ACCGCTTGTCAGAATGCCTGTTCGC 625 89 5409 Antisense
TCCTGCTCCACCGCTGAGAAGTGGT 8 595 5457 Antisense
GAAGTGGTGTTGCTCCAACAGCTCC 668 329 5474 Antisense
TTTCCAGTCCGGGTTGTGCAAAGGC 453 659 5614 Antisense
GCCGAGATTCTCACTTGGATCACGA 195 285 5703 Antisense
GTGGAGATTCGGGCCCGGAAGATCC 311 485 5735 Antisense
Sequence Source Affymetrix Proprietary Database