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[176836_s_at]

Description Y51H7C.11 /REP_DB=WormBase Gene ID /WP=CE26147 /GB=AAK39342.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 59      6grp_total > 49      4grp_total > 53      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 261.9
(3)
P 		258.6
(2.7)
M 		228.9
(0.3)
P 		187.5
(-3)
A 		74
B 267.8
(3)
P 		230.4
(-1.8)
P 		248.7
(0.6)
P 		220.6
(-3)
A 		47
C 313.4
(2.8)
P 		316.2
(3)
A 		290.1
(1.4)
P 		218
(-3)
A 		98
avr 281
(3) 		268.4
(2) 		255.9
(0.9) 		208.7
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 147.9
(-2.7)
P 		200.5
(-0.2)
P 		142.3
(-3)
P 		174.5
(-1.5)
P 		207.4
(0.1)
P 		268
(3)
P 		126
B 196.8
(-0.2)
A 		257.7
(3)
A 		163.1
(-2)
A 		144.2
(-3)
P 		181.4
(-1)
P 		218.5
(0.9)
P 		114
C 274.5
(3)
P 		176.3
(-0.7)
A 		114.8
(-3)
P 		189.6
(-0.2)
A 		213.7
(0.7)
P 		189
(-0.2)
P 		160
avr 206.4
(1.7) 		211.5
(2) 		140.1
(-3) 		169.4
(-0.9) 		200.8
(1.3) 		225.2
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 95.4
(3)
P 		56.1
(-0.5)
M 		59.8
(-0.1)
P 		27.4
(-3)
A 		68
B 85.4
(3)
P 		56.9
(-1.5)
P 		57.6
(-1.3)
P 		47
(-3)
A 		38
C 103.7
(3)
P 		90.9
(1.9)
A 		101.1
(2.8)
P 		36.8
(-3)
A 		67
avr 94.8
(3) 		68
(0.2) 		72.8
(0.7) 		37.1
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 27.3
(-3)
P 		71.3
(3)
P 		31
(-2.5)
P 		44.3
(-0.7)
P 		62.6
(1.8)
P 		65.3
(2.2)
P 		44
B 68.5
(0.8)
A 		85.8
(3)
A 		39.6
(-2.8)
A 		38.2
(-3)
P 		73.7
(1.5)
P 		81.5
(2.5)
P 		48
C 101.7
(3)
P 		53.8
(-1)
A 		29.2
(-3)
P 		38.1
(-2.3)
A 		69.2
(0.3)
P 		63.3
(-0.2)
P 		73
avr 65.8
(2.3) 		70.3
(3) 		33.3
(-3) 		40.2
(-1.9) 		68.5
(2.7) 		70
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176836_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4395
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.11 NCBI
Target Description Y51H7C.11 /REP_DB=WormBase Gene ID /WP=CE26147 /GB=AAK39342.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061571
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000035539 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1425888:1437503:-1 11/11 None
Y51H7C.11 ENSEMBL cdna:known chromosome:CEL140:II:1425764:1437505:-1 gene:Y51H7C.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061571 8/11 Cross Hyb Matching Probes None
SNAP00000035527 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1425886-1437502(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y51H7C.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39342 Hypothetical protein Y51H7C.11 [Caenorhabditis elegans] 0.0
blast NP_493972 Y51H7C.11 [Caenorhabditis elegans] 0.0
blast CAE62977 Hypothetical protein CBG07196 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005554 EMBL-EBI Nrap protein 3.7E-20
Pfam IPR005554 EMBL-EBI Nrap protein 1.2E-21
Sequence
Target Sequence 
>C. ELEGANS:176836_S_AT
gaattgtcctgaatcgacttgtagcggtggctcgtgaagcgctcaaaatgatggagaaac
aggcttttggggagaaatccattgagatggagacatccctcctgactgaaaacctctctc
catacgacgcaattattaatcttgaaccgtgtgctgtggtccgaaagaaggctctaatgg
aaagaaaaccgccggccgaaacatcgaaattccggcaaaagattccagttgtcgagttgg
atccggttgatgagctcgtttatcagctgaataatagttttcagcaggtacttttaatcc
taaaactgtggagaacaagctccgcccacaaaatggctggaaaattttggagaatttttt
tgtttgaagttgccatgttcttctacaacaagtacggtggtcaccatattggtgtaatgt
tcaaaccacaggaggatgaggttccggcgaagatctcccgctgctcactccacaaatcag
tatccgactcgacgctccgtctcaatcgggatgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGTCCTGAATCGACTTGTAGC 632 323 2690 Antisense
TAGCGGTGGCTCGTGAAGCGCTCAA 389 651 2711 Antisense
TGAGATGGAGACATCCCTCCTGACT 198 569 2772 Antisense
CTCTCTCCATACGACGCAATTATTA 536 231 2803 Antisense
TCTTGAACCGTGTGCTGTGGTCCGA 12 613 2829 Antisense
CAGTTGTCGAGTTGGATCCGGTTGA 173 205 2915 Antisense
GATCCGGTTGATGAGCTCGTTTATC 581 415 2929 Antisense
ACTGTGGAGAACAAGCTCCGCCCAC 216 97 2994 Antisense
GATGAGGTTCCGGCGAAGATCTCCC 330 411 3124 Antisense
CAAATCAGTATCCGACTCGACGCTC 678 193 3162 Antisense
ACGCTCCGTCTCAATCGGGATGAAA 626 91 3181 Antisense
Sequence Source Affymetrix Proprietary Database