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[176835_at]

Description Y51H7C.6A /REP_DB=WormBase Gene ID /WP=CE26151 /GB=AAK39338.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      4grp_high_8_8 > 61      6grp_total > 50      4grp_total > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 210.2
(-3)
P 		451.8
(3)
A 		332.2
(0)
P 		258.9
(-1.8)
A 		242
B 247.3
(-0.5)
P 		257
(0)
P 		318.7
(3)
P 		194.9
(-3)
P 		124
C 333.1
(3)
P 		315.8
(2.1)
P 		289.6
(0.7)
P 		217.2
(-3)
A 		116
avr 263.5
(-1) 		341.5
(3) 		313.5
(1.6) 		223.7
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 328.4
(1.5)
P 		207.6
(-2.8)
P 		269.9
(-0.6)
P 		371.4
(3)
P 		249
(-1.3)
P 		201
(-3)
P 		170
B 248.8
(3)
P 		247.5
(2.9)
P 		182.6
(-3)
M 		210.6
(-0.5)
P 		191.8
(-2.2)
P 		219.9
(0.4)
P 		66
C 264.2
(0.3)
M 		246.4
(-0.4)
P 		337.2
(3)
P 		281.2
(0.9)
P 		259.8
(0.1)
P 		177
(-3)
P 		160
avr 280.5
(2.5) 		233.8
(-0.7) 		263.2
(1.3) 		287.7
(3) 		233.5
(-0.7) 		199.3
(-3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 76.5
(0.8)
P 		98.1
(3)
A 		86.8
(1.9)
P 		37.9
(-3)
A 		60
B 78.9
(3)
P 		63.5
(0.5)
P 		73.9
(2.2)
P 		41.5
(-3)
P 		37
C 110.3
(3)
P 		90.8
(1.4)
P 		100.9
(2.2)
P 		36.6
(-3)
A 		74
avr 88.6
(3) 		84.1
(2.5) 		87.2
(2.8) 		38.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 60.5
(-1.5)
P 		73.8
(0.3)
P 		58.8
(-1.7)
P 		94.2
(3)
P 		75.1
(0.5)
P 		48.9
(-3)
P 		45
B 86.6
(3)
P 		82.4
(2.4)
P 		44.3
(-3)
M 		55.8
(-1.4)
P 		77.9
(1.8)
P 		82
(2.3)
P 		42
C 97.9
(3)
M 		75.2
(-0.3)
P 		85.8
(1.2)
P 		56.6
(-3)
P 		84.1
(1)
P 		59.3
(-2.6)
P 		41
avr 81.7
(3) 		77.1
(1.5) 		63
(-3) 		68.9
(-1.1) 		79
(2.1) 		63.4
(-2.9) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5055
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.6A NCBI
Target Description Y51H7C.6A /REP_DB=WormBase Gene ID /WP=CE26151 /GB=AAK39338.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061565 NCBI Caenorhabditis elegans Y51H7C.6a (Y51H7C.6) mRNA, complete cds. 11/11 A 
SNAP00000035525 ENSEMBL cdna:SNAP chromosome:CEL140:II:1403331:1408977:1 11/11 None
GENEFINDER00000035542 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1403331:1408977:1 11/11 None
Y51H7C.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:1403327:1409124:1 gene:Y51H7C.6 11/11 A 
Y51H7C.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:1403350:1409124:1 gene:Y51H7C.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173518 2 1 NM_061565 173303_s_at (11), 176835_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1403615-1408976(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y51H7C.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39338 Hypothetical protein Y51H7C.6a [Caenorhabditis elegans] ref|NP_493966.1| Y51H7C.6a [Caenorhabditis elegans] sp|Q95XZ0|COG4_CAEEL Putative conserved oligomeric Golgi complex component 0.0
blast CAE62968 Hypothetical protein CBG07185 [Caenorhabditis briggsae] 0.0
blast AAK39339 Hypothetical protein Y51H7C.6b [Caenorhabditis elegans] ref|NP_493967.1| Y51H7C.6b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176835_AT
taagctcgagcattcgacgacgcaaattgaggagtcggcgaagaaattggccagtttggc
gaagcatggggtggaggagctgtttaagagtgcatttaagaataagattaagcaaggcgc
cgatccataccaagaaatcgatcgccaaatgacaatgcaagacgtcgagtactatgaagc
tcacgacccattcatggagcaattcctggcacaaatcgaccggcttctcgttgaaaatga
gcccctactgtttgcggacaactatcagacgcttctcctgctcacttcttcagaaattgc
tcggcaaattgagcaatctctggcaaaatgtcaattcaacagatatggagcacttcaatt
ggatcgagaatatcgccagatttgtgcttatttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCTCGAGCATTCGACGACGCAA 381 637 1803 Antisense
AGATTAAGCAAGGCGCCGATCCATA 592 65 1907 Antisense
TCCATACCAAGAAATCGATCGCCAA 428 591 1926 Antisense
GTACTATGAAGCTCACGACCCATTC 430 459 1971 Antisense
TGGAGCAATTCCTGGCACAAATCGA 196 549 1997 Antisense
AATCGACCGGCTTCTCGTTGAAAAT 538 165 2016 Antisense
TTGAAAATGAGCCCCTACTGTTTGC 296 701 2033 Antisense
GCGGACAACTATCAGACGCTTCTCC 658 293 2056 Antisense
TCTCCTGCTCACTTCTTCAGAAATT 613 609 2076 Antisense
GAGCAATCTCTGGCAAAATGTCAAT 400 391 2113 Antisense
ATCGCCAGATTTGTGCTTATTTGAC 16 39 2174 Antisense
Sequence Source Affymetrix Proprietary Database