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[176834_at]

Description Y40B10A.1 /REP_DB=WormBase Gene ID /WP=CE26077 /GB=AAK70656.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 38      6grp_total > 74      4grp_total > 41      6grp_cgc > 66      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3047
1 2 3 4 range
A 2602.7
(-3)
P 		4800.2
(2.5)
P 		4994.3
(3)
P 		4143.1
(0.9)
P 		2392
B 2999.2
(-3)
P 		4307.4
(-0)
P 		5649.3
(3)
P 		3680
(-1.5)
P 		2650
C 2967.4
(-3)
P 		4669.9
(3)
P 		4682.3
(3)
P 		3670
(-0.5)
P 		1715
avr 2856.4
(-3) 		4592.5
(1.6) 		5108.6
(3) 		3831
(-0.4) 		2252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3898
1 2 3 4 5 6 range
A 4473.8
(-2.9)
P 		4416.6
(-3)
P 		7167.1
(2.9)
P 		6604.6
(1.7)
P 		7023.8
(2.6)
P 		7200
(3)
P 		2783
B 3909
(-3)
P 		4533.4
(-1.8)
P 		7028.3
(3)
P 		6749
(2.5)
P 		6917.3
(2.8)
P 		6618.2
(2.2)
P 		3119
C 4290.2
(-2.9)
P 		4249.7
(-3)
P 		6499.2
(0.8)
P 		6576.1
(0.9)
P 		6918.5
(1.5)
P 		7806.6
(3)
P 		3557
avr 4224.3
(-3) 		4399.9
(-2.6) 		6898.2
(2.4) 		6643.2
(1.9) 		6953.2
(2.5) 		7208.3
(3) 		2984
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1025
1 2 3 4 range
A 947.7
(-0.1)
P 		1042
(0.7)
P 		1305.6
(3)
P 		606.5
(-3)
P 		699
B 956.4
(-1)
P 		1063.8
(0.2)
P 		1309.1
(3)
P 		784.2
(-3)
P 		525
C 982.3
(-0.8)
P 		1342.6
(1.3)
P 		1631.9
(3)
P 		618.8
(-3)
P 		1013
avr 962.1
(-0.6) 		1149.5
(0.9) 		1415.5
(3) 		669.8
(-3) 		746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1986
1 2 3 4 5 6 range
A 824.7
(-3)
P 		1570.8
(0.5)
P 		1560.8
(0.4)
P 		1675.1
(0.9)
P 		2119.5
(3)
P 		1753
(1.3)
P 		1295
B 1360.1
(-3)
P 		1509
(-2.4)
P 		1706.7
(-1.6)
P 		1787.6
(-1.2)
P 		2810.4
(3)
P 		2467.9
(1.6)
P 		1450
C 1590.2
(-1.7)
P 		1296.7
(-3)
P 		1654.2
(-1.4)
P 		1322.4
(-2.9)
P 		2238.7
(1.3)
P 		2613.3
(3)
P 		1317
avr 1258.3
(-3) 		1458.8
(-1.9) 		1640.6
(-1) 		1595
(-1.2) 		2389.5
(3) 		2278.1
(2.4) 		1131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15888
Sequence Type Exemplar sequence
Representative Public ID Y40B10A.1 NCBI
Target Description Y40B10A.1 /REP_DB=WormBase Gene ID /WP=CE26077 /GB=AAK70656.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071161 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-9) (lbp-9) mRNA, complete cds. 11/11 None
SNAP00000009380 ENSEMBL cdna:SNAP chromosome:CEL140:V:2068398:2068865:1 9/11 None
GENEFINDER00000009387 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2068398:2068865:1 9/11 None
Y40B10A.1 ENSEMBL cdna:known chromosome:CEL140:V:2068277:2068957:1 gene:Y40B10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2068276-2068865(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lbp-9
Ensembl Y40B10A.1
Entrez Gene 178686 Entrez gene
SwissProt Q965W1 EMBL-EBI
WormBase CE26077 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.13406.1.S1_S_AT similar to Myelin P2 protein cfa
CANINE_2:CFAAFFX.13408.1.S1_AT similar to Myelin P2 protein cfa
CANINE_2:CFAAFFX.13408.1.S1_X_AT similar to Myelin P2 protein cfa
CHICKEN:GGA.11378.1.S1_AT peripheral myelin protein 2 gga
CHICKEN:GGA.11378.1.S1_S_AT peripheral myelin protein 2 gga
HG-U133_PLUS_2:206826_AT peripheral myelin protein 2 hs
HG-U133A:206826_AT peripheral myelin protein 2 hs
HG-FOCUS:206826_AT peripheral myelin protein 2 hs
HG-U133A_2:206826_AT peripheral myelin protein 2 hs
HU35KSUBD:RC_AA426010_AT peripheral myelin protein 2 hs
HUGENEFL:D16181_AT peripheral myelin protein 2 hs
U133_X3P:G4505908_3P_AT peripheral myelin protein 2 hs
U133_X3P:HS.301347.0.A1_3P_AT peripheral myelin protein 2 hs
HG-U133_PLUS_2:235127_AT peripheral myelin protein 2 hs
HG-U133B:235127_AT peripheral myelin protein 2 hs
HG-U95AV2:36272_R_AT peripheral myelin protein 2 hs
HG-U95C:54514_AT peripheral myelin protein 2 hs
MOE430B:1458193_AT similar to myelin P2 protein - mouse mm
MOUSE430_2:1458193_AT similar to myelin P2 protein - mouse mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK70656 Lipid binding protein protein 9, isoform a [Caenorhabditis elegans] ref|NP_503562.1| Lipid Binding Protein family member (lbp-9) [Caenorhabditis elegans] sp|Q965W1|FABP9_CAEEL Fatty acid-binding protein homolog 3.0E-85
blast CAE66793 Hypothetical protein CBG12153 [Caenorhabditis briggsae] 2.0E-77
blast ABA61863 Lipid binding protein protein 9, isoform b [Caenorhabditis elegans] 4.0E-76
blast AAK70656 Lipid binding protein protein 9, isoform a [Caenorhabditis elegans] ref|NP_503562.1| Lipid Binding Protein family member (lbp-9) [Caenorhabditis elegans] sp|Q965W1|FABP9_CAEEL Fatty acid-binding protein homolog 4.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 5.3E-27
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 5.3E-27
Sequence
Target Sequence 
>C. ELEGANS:176834_AT
ttctgctttcttcaagactgcgcactgtgcattgagaaacatgccaattcaaaccgatct
tgttggaaagtggaacttcgtttcctcggaaaacttcgacgagtacctcaaggaggtcgg
agtcggatgggccatcagaaccatcgccaccaagaccaagccagctcttgagttcgccgt
caacggagacgaatggaccatgaactccaactcgaccttcaagaactacaccctcaagtg
gaagctcggaaccgcttctgacgagaaaaccgctgacggtcgtgatgtgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGCTTTCTTCAAGACTGCGCAC 633 691 18 Antisense
AAACATGCCAATTCAAACCGATCTT 209 129 54 Antisense
GAAAACTTCGACGAGTACCTCAAGG 186 353 106 Antisense
AGGAGGTCGGAGTCGGATGGGCCAT 249 57 128 Antisense
GGATGGGCCATCAGAACCATCGCCA 580 513 142 Antisense
CCACCAAGACCAAGCCAGCTCTTGA 536 273 164 Antisense
ATGGACCATGAACTCCAACTCGACC 7 51 210 Antisense
CAACTCGACCTTCAAGAACTACACC 335 187 225 Antisense
GAACTACACCCTCAAGTGGAAGCTC 24 351 240 Antisense
AAGCTCGGAACCGCTTCTGACGAGA 174 149 259 Antisense
AACCGCTGACGGTCGTGATGTGTCG 343 147 285 Antisense
Sequence Source Affymetrix Proprietary Database