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[176833_s_at]

Description F41H10.6B /REP_DB=WormBase Gene ID /WP=CE25887 /GB=AAK29810.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_high_8_8 > 15      6grp_highest_nonorm > 95      6grp_total > 77      4grp_total > 08      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 476.1
(-2.3)
P 		445.3
(-3)
P 		572.6
(-0.3)
P 		728.3
(3)
P 		283
B 467.7
(-3)
P 		531.2
(-1.4)
M 		497.7
(-2.2)
P 		705.7
(3)
P 		238
C 438.3
(-3)
P 		485.9
(-1)
P 		491.3
(-0.7)
P 		578.1
(3)
P 		140
avr 460.7
(-3) 		487.5
(-2.2) 		520.5
(-1.3) 		670.7
(3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 748
1 2 3 4 5 6 range
A 709.1
(-1.3)
P 		532.4
(-3)
P 		597.6
(-2.4)
P 		788.2
(-0.5)
P 		809.6
(-0.3)
P 		1154
(3)
P 		622
B 572.4
(-2.9)
P 		562.7
(-3)
P 		580.8
(-2.8)
P 		727.9
(-1.5)
P 		748.9
(-1.3)
P 		1215.9
(3)
P 		653
C 467.7
(-3)
P 		614.6
(-1.8)
P 		694.1
(-1.2)
P 		741
(-0.8)
P 		704.7
(-1.1)
P 		1211.8
(3)
P 		744
avr 583.1
(-2.9) 		569.9
(-3) 		624.2
(-2.5) 		752.4
(-1.2) 		754.4
(-1.2) 		1193.9
(3) 		624
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 173.3
(3)
P 		96.7
(-3)
P 		149.7
(1.2)
P 		106.6
(-2.2)
P 		77
B 149.2
(2.8)
P 		131.2
(-0.3)
M 		115.3
(-3)
P 		150.4
(3)
P 		35
C 145.1
(0.9)
P 		139.7
(0.4)
P 		171.2
(3)
P 		97.5
(-3)
P 		74
avr 155.9
(3) 		122.5
(-2.3) 		145.4
(1.3) 		118.2
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 130.7
(-3)
P 		189.3
(-0.6)
P 		130.1
(-3)
P 		199.9
(-0.2)
P 		244.3
(1.5)
P 		281
(3)
P 		151
B 199.2
(-1.9)
P 		187.3
(-2.1)
P 		141
(-3)
P 		192.8
(-2)
P 		304.3
(0.1)
P 		453.4
(3)
P 		312
C 173.4
(-2.4)
P 		187.5
(-2.1)
P 		176.7
(-2.4)
P 		149
(-3)
P 		228
(-1.2)
P 		405.7
(3)
P 		257
avr 167.8
(-2.5) 		188
(-2) 		149.3
(-3) 		180.6
(-2.2) 		258.9
(-0.1) 		380
(3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176833_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10560
Sequence Type Exemplar sequence
Representative Public ID F41H10.6B NCBI
Target Description F41H10.6B /REP_DB=WormBase Gene ID /WP=CE25887 /GB=AAK29810.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068386(11), NM_068387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068386 NCBI Caenorhabditis elegans F41H10.6b (F41H10.6) mRNA, complete cds. 11/11 None
NM_068387 NCBI Caenorhabditis elegans F41H10.6a (F41H10.6) mRNA, complete cds. 11/11 None
SNAP00000003902 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5356601:5360072:-1 11/11 None
GENEFINDER00000003921 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5356601:5359215:-1 11/11 None
F41H10.6b ENSEMBL cdna:known chromosome:CEL140:IV:5356527:5364210:-1 gene:F41H10.6 11/11 None
F41H10.6a ENSEMBL cdna:known chromosome:CEL140:IV:5356555:5364257:-1 gene:F41H10.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5356606-5364216(-) 100.0 100.0
Public Domain and Genome References
Ensembl F41H10.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29810 Hypothetical protein F41H10.6b [Caenorhabditis elegans] ref|NP_500787.1| F41H10.6b [Caenorhabditis elegans] sp|Q20296|HDA6_CAEEL Histone deactylase 0.0
blast AAK29809 Hypothetical protein F41H10.6a [Caenorhabditis elegans] ref|NP_500788.1| F41H10.6a [Caenorhabditis elegans] 0.0
blast CAE72722 Hypothetical protein CBG19959 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001607 EMBL-EBI Zn-finger in ubiquitin thiolesterase 1.4E-20
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 1.0E-126
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 1.1E-105
Pfam IPR001607 EMBL-EBI Zn-finger in ubiquitin thiolesterase 1.4E-20
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 4.0E-85
Pfam IPR001607 EMBL-EBI Zn-finger in ubiquitin thiolesterase 1.4E-20
Pfam IPR000286 EMBL-EBI Histone deacetylase superfamily 4.0E-85
Sequence
Target Sequence 
>C. ELEGANS:176833_S_AT
cgacgacgaagcctacgacgacgattcaatagacatggctgatcaatcgtcttcatctgg
atcttcatcatcatcaactcgaccatctcataatcttgaaattatggattcgggaccagc
acacgccgttgttccacttgccacgtgtccacatttgaaagaagttaagccactgccgcc
agccaaaatcaatgctcggacagcttgctccgagtgccaaattggggcagaagtgtggac
ttgtctcacttgttataagtataactgtggtcgttttgtcaacgaacacgcaatgatgca
ccatctctcatcatctcatccaatggctctttcaatggctgatctctctgtttggtgcta
tcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGACGAAGCCTACGACGACGAT 618 249 2430 Antisense
GACATGGCTGATCAATCGTCTTCAT 426 369 2461 Antisense
ATCATCAACTCGACCATCTCATAAT 180 31 2499 Antisense
ACTTGCCACGTGTCCACATTTGAAA 179 105 2565 Antisense
AATCAATGCTCGGACAGCTTGCTCC 124 171 2616 Antisense
AGCTTGCTCCGAGTGCCAAATTGGG 233 79 2631 Antisense
GTGTGGACTTGTCTCACTTGTTATA 383 487 2662 Antisense
ACGCAATGATGCACCATCTCTCATC 707 91 2717 Antisense
TCATCATCTCATCCAATGGCTCTTT 109 621 2737 Antisense
ATGGCTCTTTCAATGGCTGATCTCT 676 51 2752 Antisense
TGATCTCTCTGTTTGGTGCTATCCA 477 565 2769 Antisense
Sequence Source Affymetrix Proprietary Database